RNA id: TU144991


Basic Information

Item Value
RNA id TU144991
length 297
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G127608
representative True

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 2438074 ~ 2438370 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TATATCTGCAAATATTTCGTATATCCTTGTTTCGGTTTCTCCTTTTGAATGATGAATATAGACTATTGATACCTTCTGATATAGATAGTTAATTCCTTACATGTAGGCGCAGAACGCACATGCTAGTTTTCAGTCGGCTGTAGTCTGTGCTGTGTGTTCAAGCGCAGGTTTTGGTCCAGACGCACATGCTAGTTCCACACATAGTAGTTCCACCAGATCCTCCTGTCAACCCTCATGACAAAAGGCATCTCAGGAACTGCACTCTAGAGGTTCAAGTCTGACCTCTCAGGTAGGTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU144892 lncRNA upstream 11068 2393683 ~ 2427006 (+) False G127519
TU144887 lncRNA upstream 11068 2423747 ~ 2427006 (+) False G127519
TU144888 lncRNA upstream 11068 2423747 ~ 2427006 (+) False G127519
TU144891 lncRNA upstream 11068 2423747 ~ 2427006 (+) True G127519
TU144980 lncRNA upstream 50491 2387323 ~ 2387583 (+) True G127597
TU144992 lncRNA downstream 24 2438394 ~ 2438730 (+) True G127609
TU144993 lncRNA downstream 515 2438885 ~ 2439176 (+) True G127610
TU144997 lncRNA downstream 6447 2444817 ~ 2445051 (+) True G127614
TU145012 lncRNA downstream 75861 2514231 ~ 2583751 (+) False G127623
TU145009 lncRNA downstream 96836 2535206 ~ 2583751 (+) False G127623
CI01000026_02400893_02403816.mRNA mRNA upstream 34243 2399889 ~ 2403831 (+) True CI01000026_02400893_02403816
CI01000026_02351177_02371429.mRNA mRNA upstream 66256 2351104 ~ 2371818 (+) True CI01000026_02351177_02371429
CI01000026_02332785_02336722.mRNA mRNA upstream 101128 2332203 ~ 2336946 (+) True CI01000026_02332785_02336722
CI01000026_02318608_02319349.mRNA mRNA upstream 118200 2318608 ~ 2319874 (+) True CI01000026_02318608_02319349
CI01000026_02249557_02256584.mRNA mRNA upstream 181088 2247478 ~ 2256986 (+) True CI01000026_02249557_02256584
CI01000026_02476591_02498283.mRNA mRNA downstream 38221 2476591 ~ 2498501 (+) True CI01000026_02476591_02498283
CI01000026_02559910_02563125.mRNA mRNA downstream 121473 2559843 ~ 2563679 (+) True CI01000026_02559910_02563125
CI01000026_02602796_02611957.mRNA mRNA downstream 164426 2602796 ~ 2612380 (+) True CI01000026_02602796_02611957
CI01000026_02650632_02651292.mRNA mRNA downstream 212262 2650632 ~ 2651507 (+) True CI01000026_02650632_02651292
CI01000026_02659356_02660297.mRNA mRNA downstream 220235 2658605 ~ 2660653 (+) False CI01000026_02659356_02660297
TU144890 other upstream 11068 2393683 ~ 2427006 (+) False G127519
TU144889 other upstream 11068 2423747 ~ 2427006 (+) False G127519
TU144910 other upstream 125939 2309322 ~ 2312135 (+) True G127531
TU144867 other upstream 491635 1931183 ~ 1946439 (+) True G127500
TU143767 other upstream 1660277 776757 ~ 777797 (+) True CI01000026_00776867_00777588
TU145006 other downstream 220845 2659215 ~ 2660829 (+) True CI01000026_02659356_02660297
TU145397 other downstream 1314181 3752551 ~ 3762986 (+) True G127979
TU145592 other downstream 1849503 4287873 ~ 4318645 (+) True G128133
TU145596 other downstream 1992192 4430562 ~ 4431201 (+) True G128137
TU145659 other downstream 2117406 4555776 ~ 4556317 (+) True CI01000026_04556074_04556964

Expression Profile