RNA id: TU146081


Basic Information

Item Value
RNA id TU146081
length 237
lncRNA type intronic
GC content 0.33
exon number 1
gene id G128577
representative True

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 5930215 ~ 5930451 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTATATCTTCCCCCTGATGTTTCCAAGCAAGTGACACCAGCTGTAAAAGGTTACAAGTGCAAAGATATTAATCTCTGACATGAGGAAATGTTTTCCCTATTGAATTGCCGCTACAAAATGTGCTATACAAAAAACCTTGCCTTGCCTAATTTTACCTTTGCATAATGTTATTGAGTGAGGTGATACCATTATTAGGCTATAATTAATAGTACAAAAAATTATTAAACTATACTAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU146080 lncRNA upstream 8214 5921761 ~ 5922001 (+) True G128576
TU146079 lncRNA upstream 10344 5919580 ~ 5919871 (+) True G128575
TU146078 lncRNA upstream 17423 5912533 ~ 5912792 (+) True G128574
TU146077 lncRNA upstream 19923 5910080 ~ 5910292 (+) True G128573
TU146076 lncRNA upstream 20233 5909599 ~ 5909982 (+) True G128572
TU146082 lncRNA downstream 64 5930515 ~ 5930834 (+) True G128578
TU146084 lncRNA downstream 4930 5935381 ~ 5935631 (+) True G128580
TU146085 lncRNA downstream 9925 5940376 ~ 5940689 (+) True G128581
TU146086 lncRNA downstream 10514 5940965 ~ 5941205 (+) True G128582
TU146088 lncRNA downstream 17393 5947844 ~ 5948057 (+) True G128584
CI01000026_05828041_05831860.mRNA mRNA upstream 98206 5828041 ~ 5832009 (+) True CI01000026_05828041_05831860
CI01000026_05820062_05827011.mRNA mRNA upstream 102790 5820062 ~ 5827425 (+) True CI01000026_05820062_05827011
CI01000026_05809690_05817205.mRNA mRNA upstream 112742 5809690 ~ 5817473 (+) True CI01000026_05809690_05817205
CI01000026_05793556_05805041.mRNA mRNA upstream 125090 5793556 ~ 5805125 (+) True CI01000026_05793556_05805041
CI01000026_05771496_05786357.mRNA mRNA upstream 143858 5771496 ~ 5786357 (+) True CI01000026_05771496_05786357
CI01000026_06109467_06140429.mRNA mRNA downstream 179016 6109467 ~ 6141599 (+) True CI01000026_06109467_06140429
CI01000026_06174460_06187224.mRNA mRNA downstream 243438 6173889 ~ 6187476 (+) True CI01000026_06174460_06187224
CI01000026_06234663_06316874.mRNA mRNA downstream 304212 6234663 ~ 6316874 (+) True CI01000026_06234663_06316874
CI01000026_06332081_06337355.mRNA mRNA downstream 401288 6331739 ~ 6337396 (+) True CI01000026_06332081_06337355
CI01000026_06385815_06391975.mRNA mRNA downstream 455364 6385815 ~ 6392502 (+) True CI01000026_06385815_06391975
TU145659 other upstream 1373898 4555776 ~ 4556317 (+) True CI01000026_04556074_04556964
TU145596 other upstream 1499014 4430562 ~ 4431201 (+) True G128137
TU145592 other upstream 1598130 4287873 ~ 4318645 (+) True G128133
TU145397 other upstream 2167229 3752551 ~ 3762986 (+) True G127979
TU145006 other upstream 3269386 2659215 ~ 2660829 (+) True CI01000026_02659356_02660297
TU146089 other downstream 19362 5949813 ~ 5950122 (+) True G128585
TU146105 other downstream 53428 5983879 ~ 5991761 (+) True G128601
TU146291 other downstream 395745 6326196 ~ 6326785 (+) False G128757
TU146290 other downstream 395827 6326278 ~ 6326785 (+) True G128757
TU148442 other downstream 1164602 7095053 ~ 7096652 (+) True G130552

Expression Profile