RNA id: TU146161


Basic Information

Item Value
RNA id TU146161
length 448
lncRNA type intronic
GC content 0.50
exon number 2
gene id G128646
representative True

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 6034029 ~ 6039053 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGTCAACAGAGTGGGGATCCATTTGCAGCTTTTATTAAGAATAGTAAATACACAGGTAAGGGCAGAGGCAGAGACGTAAACGGGGACAGGCAATGGTCGAGGCAGGCGGCAGACAAACGGTATCAGGAAGCAGGCAGAGATCAGGGCAGGCGGCAAACAAACACAGTCCAGTAAACAGGCAAGGATCAAGGCAGGCGGCAGAGAATCACAAGAGATAAACAGTCCAATCGGTAACGGTATAACAATCCACAGAAAACGCTTAGAAATGATCACCGGGGCAAATCAAGACTTCGCAATGTGTGTGTGTGTGCGTGCTGCTTAAATAGTGTGAGTGTGATGTGGTGCAGGTGTGTGTGCAATCAGTCCCAGGAATGAGGGCCTATGGGAAATGTAGTCTGAATGATGATCTCAATATTCCGGTGAAGGCTCCCTCCGGTGGTGCGGGGGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU146148 lncRNA upstream 12958 6020766 ~ 6021071 (+) True G128637
TU146095 lncRNA upstream 65925 5967772 ~ 5968104 (+) True G128591
TU146094 lncRNA upstream 67489 5966215 ~ 5966540 (+) True G128590
TU146092 lncRNA upstream 75915 5957901 ~ 5958114 (+) True G128588
TU146091 lncRNA upstream 80299 5953432 ~ 5953730 (+) True G128587
TU146163 lncRNA downstream 287 6039340 ~ 6044316 (+) True G128647
TU146128 lncRNA downstream 9013 6048066 ~ 6085995 (+) True G128619
TU146170 lncRNA downstream 12817 6051870 ~ 6052325 (+) True G128654
TU146130 lncRNA downstream 30156 6069209 ~ 6070300 (+) True G128620
TU146133 lncRNA downstream 108814 6147867 ~ 6148855 (+) False G128622
CI01000026_05828041_05831860.mRNA mRNA upstream 202020 5828041 ~ 5832009 (+) True CI01000026_05828041_05831860
CI01000026_05820062_05827011.mRNA mRNA upstream 206604 5820062 ~ 5827425 (+) True CI01000026_05820062_05827011
CI01000026_05809690_05817205.mRNA mRNA upstream 216556 5809690 ~ 5817473 (+) True CI01000026_05809690_05817205
CI01000026_05793556_05805041.mRNA mRNA upstream 228904 5793556 ~ 5805125 (+) True CI01000026_05793556_05805041
CI01000026_05771496_05786357.mRNA mRNA upstream 247672 5771496 ~ 5786357 (+) True CI01000026_05771496_05786357
CI01000026_06109467_06140429.mRNA mRNA downstream 70414 6109467 ~ 6141599 (+) True CI01000026_06109467_06140429
CI01000026_06174460_06187224.mRNA mRNA downstream 134836 6173889 ~ 6187476 (+) True CI01000026_06174460_06187224
CI01000026_06234663_06316874.mRNA mRNA downstream 195610 6234663 ~ 6316874 (+) True CI01000026_06234663_06316874
CI01000026_06332081_06337355.mRNA mRNA downstream 292686 6331739 ~ 6337396 (+) True CI01000026_06332081_06337355
CI01000026_06385815_06391975.mRNA mRNA downstream 346762 6385815 ~ 6392502 (+) True CI01000026_06385815_06391975
TU146105 other upstream 42268 5983879 ~ 5991761 (+) True G128601
TU146089 other upstream 83907 5949813 ~ 5950122 (+) True G128585
TU145659 other upstream 1477712 4555776 ~ 4556317 (+) True CI01000026_04556074_04556964
TU145596 other upstream 1602828 4430562 ~ 4431201 (+) True G128137
TU145592 other upstream 1701944 4287873 ~ 4318645 (+) True G128133
TU146291 other downstream 287143 6326196 ~ 6326785 (+) False G128757
TU146290 other downstream 287225 6326278 ~ 6326785 (+) True G128757
TU148442 other downstream 1056000 7095053 ~ 7096652 (+) True G130552
TU148937 other downstream 2149321 8188374 ~ 8189073 (+) True G130967
TU148972 other downstream 2259520 8298573 ~ 8299414 (+) False CI01000026_08297901_08307596

Expression Profile