RNA id: TU146095


Basic Information

Item Value
RNA id TU146095
length 333
lncRNA type antisense_over
GC content 0.51
exon number 1
gene id G128591
representative True

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 5967772 ~ 5968104 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCCAATACCGCGAGAGAAATCACACACTTACCGACAAAAGCGAGCAGGAGTATTCCGAGTGAGCATGGAGCCTGACGGCGCCGTCTGGAAGCCATTTAATCACATTGAAATTTAGACGAGATGCAAAAAAGAAGGTGAGGCAAGAGCGAAGACAAGGATGGGAAAGCAGTAATAAGCTCCTCTAGATCCAAACTACAGCCGGTGGCTCCAACATACTTGCGCCATTTTACACATCTTTCTAGGAATGTGTCAGCAGCATCTCACGCTCTCTCCTCCTCGAGACCAGCACACGCGCTCATCCACCTTTCTGAGCTCGCTCGCTCGCTCTCTCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU146094 lncRNA upstream 1232 5966215 ~ 5966540 (+) True G128590
TU146092 lncRNA upstream 9658 5957901 ~ 5958114 (+) True G128588
TU146091 lncRNA upstream 14042 5953432 ~ 5953730 (+) True G128587
TU146090 lncRNA upstream 14561 5952912 ~ 5953211 (+) True G128586
TU146088 lncRNA upstream 19715 5947844 ~ 5948057 (+) True G128584
TU146148 lncRNA downstream 52662 6020766 ~ 6021071 (+) True G128637
TU146160 lncRNA downstream 65925 6034029 ~ 6039053 (+) False G128646
TU146161 lncRNA downstream 65925 6034029 ~ 6039053 (+) True G128646
TU146163 lncRNA downstream 71236 6039340 ~ 6044316 (+) True G128647
TU146128 lncRNA downstream 79962 6048066 ~ 6085995 (+) True G128619
CI01000026_05828041_05831860.mRNA mRNA upstream 135763 5828041 ~ 5832009 (+) True CI01000026_05828041_05831860
CI01000026_05820062_05827011.mRNA mRNA upstream 140347 5820062 ~ 5827425 (+) True CI01000026_05820062_05827011
CI01000026_05809690_05817205.mRNA mRNA upstream 150299 5809690 ~ 5817473 (+) True CI01000026_05809690_05817205
CI01000026_05793556_05805041.mRNA mRNA upstream 162647 5793556 ~ 5805125 (+) True CI01000026_05793556_05805041
CI01000026_05771496_05786357.mRNA mRNA upstream 181415 5771496 ~ 5786357 (+) True CI01000026_05771496_05786357
CI01000026_06109467_06140429.mRNA mRNA downstream 141363 6109467 ~ 6141599 (+) True CI01000026_06109467_06140429
CI01000026_06174460_06187224.mRNA mRNA downstream 205785 6173889 ~ 6187476 (+) True CI01000026_06174460_06187224
CI01000026_06234663_06316874.mRNA mRNA downstream 266559 6234663 ~ 6316874 (+) True CI01000026_06234663_06316874
CI01000026_06332081_06337355.mRNA mRNA downstream 363635 6331739 ~ 6337396 (+) True CI01000026_06332081_06337355
CI01000026_06385815_06391975.mRNA mRNA downstream 417711 6385815 ~ 6392502 (+) True CI01000026_06385815_06391975
TU146089 other upstream 17650 5949813 ~ 5950122 (+) True G128585
TU145659 other upstream 1411455 4555776 ~ 4556317 (+) True CI01000026_04556074_04556964
TU145596 other upstream 1536571 4430562 ~ 4431201 (+) True G128137
TU145592 other upstream 1635687 4287873 ~ 4318645 (+) True G128133
TU145397 other upstream 2204786 3752551 ~ 3762986 (+) True G127979
TU146105 other downstream 15775 5983879 ~ 5991761 (+) True G128601
TU146291 other downstream 358092 6326196 ~ 6326785 (+) False G128757
TU146290 other downstream 358174 6326278 ~ 6326785 (+) True G128757
TU148442 other downstream 1126949 7095053 ~ 7096652 (+) True G130552
TU148937 other downstream 2220270 8188374 ~ 8189073 (+) True G130967

Expression Profile