RNA id: CI01000027_08026500_08029412.mRNA



Basic Information


Item Value
RNA id CI01000027_08026500_08029412.mRNA
length 1085
RNA type mRNA
GC content 0.39
exon number 3
gene id CI01000027_08026500_08029412
representative False

Chromosome Information


Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 8025788 ~ 8032041 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GTATAAAATTATGCAAATATAGCAATAAAGCATTATTTCTTCATTTGAAAAACAGCAATACGTACTATGGATTTATGGAACATTTTTAAATTATTATTAATTACAGTTTTTTTTTTTTTTAAATCTACACTTTTTTTGTTAAAAGTATCACATGTCAAGTCTTGAACGTAGTGGAGTTGTGCAGGGAAAAGATTATAATATATTTAGGATATGGGATAGCAGATTAAAATGCATGACTGATGAATTGTATATGAAGTCTACTTAGGCCTAGGCTTTAAAATTACTTTTTCAAAAACAGCAATTATAAGGTCTCTCCTAGATAACAATATAGTCGCAGGCTTGTTCCCCACTGAAAACCTTTTGAGAATTTTTATTAACATCCCCTGTAAATTTTAATATAATTGAACAGTTTCAATTGTCCAATATAATGTTTATTATTGTATGAGCTCGCAAAGGCATTGTAGCTTACCATTGGTCACTTATTTATTTTGATATGACTATTGGAAATCTACTGGCTGGTTCTTCTGTCTCTCAAACATCAAACCAGATTCCTATTGGCTTTTCCGCTCCTTGACCGTCCCCCAAAGTGACGTCTCTGCAGCGGACGCCATTTTGATACTGAACACCGTGGGTGGATCGGATCGGGCGCGAATAGACAGCAAAATTGACACTTAAACACGTTGATTACTTGATCAACAAACGCCGAACAGACATGTCATCAGATAACCAGGACACGGAGACGCATTCGGAGAAGGTGGACGAGACTCAGGAATCTCAGGACACAAACTCAAATCCTGTGCGGACAGATGAGGCCAACTTGAAAATGAAGTATCCCGGCTTGGGTCAAAAGCCAGGTGGCTCTGACTTCCTGATGAAGAGACTGCAGAAAGGGCAAAAGTATTTTGACTCAGGAGATTACAACATGGCCAAGGCAAAGATGAAGAACAAACAGCTGCCTGCCGCAGCCGGTCCAGACAAGAACATCGTTACCGGGGATCACATTCCAACCCCACAAGACCTTCCGCAGAGAAAGTCCTCATTGGTTACAAGTAAACTGGCTGGCTAACATCACCCGTAGGTTTTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU161999 lncRNA upstream 3529 8021941 ~ 8022259 (+) True G142559
TU161997 lncRNA upstream 8119 8017440 ~ 8017669 (+) True G142557
TU161996 lncRNA upstream 8790 8016770 ~ 8016998 (+) True G142556
TU161956 lncRNA upstream 19528 8003190 ~ 8006260 (+) True G142516
TU161990 lncRNA upstream 23434 8002056 ~ 8002354 (+) True G142550
TU161958 lncRNA downstream 16813 8046244 ~ 8050580 (+) True G142518
TU162020 lncRNA downstream 101948 8131379 ~ 8131664 (+) True G142580
TU162034 lncRNA downstream 120394 8149825 ~ 8150579 (+) True G142594
TU162050 lncRNA downstream 138914 8168345 ~ 8168569 (+) True G142610
TU162057 lncRNA downstream 149639 8179070 ~ 8179281 (+) True G142617
CI01000027_07981813_07992141.mRNA mRNA upstream 33516 7981637 ~ 7992272 (+) False CI01000027_07981813_07992141
CI01000027_07973865_07979402.mRNA mRNA upstream 46325 7973695 ~ 7979463 (+) False CI01000027_07973865_07979402
CI01000027_07962587_07964571.mRNA mRNA upstream 61183 7962587 ~ 7964605 (+) True CI01000027_07962587_07964571
CI01000027_07954714_07957187.mRNA mRNA upstream 68339 7954714 ~ 7957449 (+) True CI01000027_07954714_07957187
CI01000027_07947743_07951397.mRNA mRNA upstream 74025 7947743 ~ 7951763 (+) False CI01000027_07947743_07951397
CI01000027_08033124_08037571.mRNA mRNA downstream 3540 8032971 ~ 8039234 (+) True CI01000027_08033124_08037571
CI01000027_08052743_08058881.mRNA mRNA downstream 23247 8052678 ~ 8059107 (+) True CI01000027_08052743_08058881
CI01000027_08064283_08072145.mRNA mRNA downstream 32253 8061684 ~ 8072249 (+) True CI01000027_08064283_08072145
CI01000027_08078236_08079316.mRNA mRNA downstream 48805 8078236 ~ 8079950 (+) True CI01000027_08078236_08079316
CI01000027_08255251_08264629.mRNA mRNA downstream 225642 8255073 ~ 8264897 (+) False CI01000027_08255251_08264629
TU161924 other upstream 73846 7950703 ~ 7951942 (+) True CI01000027_07947743_07951397
TU160585 other upstream 554074 7468744 ~ 7468892 (+) True G141315
TU160307 other upstream 1068021 6952946 ~ 6957767 (+) True CI01000027_06951132_06956691
TU160326 other upstream 1124865 6898411 ~ 6900923 (+) True G141082
TU160305 other upstream 1315156 6707174 ~ 6710632 (+) True G141061
TU161951 other downstream 228906 8258337 ~ 8258629 (+) True G142511
TU162507 other downstream 1699384 9728815 ~ 9729551 (+) True G143033

Expression Profile