Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU161938 |
| length | 3086 |
| RNA type | TUCP |
| GC content | 0.37 |
| exon number | 3 |
| gene id | CI01000027_08026500_08029412 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000027 |
| NCBI id | null |
| chromosome length | 10680226 |
| location | 8025788 ~ 8032041 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU161999 | lncRNA | upstream | 4138 | 8021941 ~ 8022259 (+) | True | G142559 |
| TU161997 | lncRNA | upstream | 8728 | 8017440 ~ 8017669 (+) | True | G142557 |
| TU161996 | lncRNA | upstream | 9399 | 8016770 ~ 8016998 (+) | True | G142556 |
| TU161956 | lncRNA | upstream | 20137 | 8003190 ~ 8006260 (+) | True | G142516 |
| TU161990 | lncRNA | upstream | 24043 | 8002056 ~ 8002354 (+) | True | G142550 |
| TU161958 | lncRNA | downstream | 14203 | 8046244 ~ 8050580 (+) | True | G142518 |
| TU162020 | lncRNA | downstream | 99338 | 8131379 ~ 8131664 (+) | True | G142580 |
| TU162034 | lncRNA | downstream | 117784 | 8149825 ~ 8150579 (+) | True | G142594 |
| TU162050 | lncRNA | downstream | 136304 | 8168345 ~ 8168569 (+) | True | G142610 |
| TU162057 | lncRNA | downstream | 147029 | 8179070 ~ 8179281 (+) | True | G142617 |
| CI01000027_07981813_07992141.mRNA | mRNA | upstream | 34125 | 7981637 ~ 7992272 (+) | False | CI01000027_07981813_07992141 |
| CI01000027_07973865_07979402.mRNA | mRNA | upstream | 46934 | 7973695 ~ 7979463 (+) | False | CI01000027_07973865_07979402 |
| CI01000027_07962587_07964571.mRNA | mRNA | upstream | 61792 | 7962587 ~ 7964605 (+) | True | CI01000027_07962587_07964571 |
| CI01000027_07954714_07957187.mRNA | mRNA | upstream | 68948 | 7954714 ~ 7957449 (+) | True | CI01000027_07954714_07957187 |
| CI01000027_07947743_07951397.mRNA | mRNA | upstream | 74634 | 7947743 ~ 7951763 (+) | False | CI01000027_07947743_07951397 |
| CI01000027_08033124_08037571.mRNA | mRNA | downstream | 930 | 8032971 ~ 8039234 (+) | True | CI01000027_08033124_08037571 |
| CI01000027_08052743_08058881.mRNA | mRNA | downstream | 20637 | 8052678 ~ 8059107 (+) | True | CI01000027_08052743_08058881 |
| CI01000027_08064283_08072145.mRNA | mRNA | downstream | 29643 | 8061684 ~ 8072249 (+) | True | CI01000027_08064283_08072145 |
| CI01000027_08078236_08079316.mRNA | mRNA | downstream | 46195 | 8078236 ~ 8079950 (+) | True | CI01000027_08078236_08079316 |
| CI01000027_08255251_08264629.mRNA | mRNA | downstream | 223032 | 8255073 ~ 8264897 (+) | False | CI01000027_08255251_08264629 |
| TU161924 | other | upstream | 74455 | 7950703 ~ 7951942 (+) | True | CI01000027_07947743_07951397 |
| TU160585 | other | upstream | 554683 | 7468744 ~ 7468892 (+) | True | G141315 |
| TU160307 | other | upstream | 1068630 | 6952946 ~ 6957767 (+) | True | CI01000027_06951132_06956691 |
| TU160326 | other | upstream | 1125474 | 6898411 ~ 6900923 (+) | True | G141082 |
| TU160305 | other | upstream | 1315765 | 6707174 ~ 6710632 (+) | True | G141061 |
| TU161951 | other | downstream | 226296 | 8258337 ~ 8258629 (+) | True | G142511 |
| TU162507 | other | downstream | 1696774 | 9728815 ~ 9729551 (+) | True | G143033 |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| zebrafish (Danio rerio) | TCONS_00019925 | True | 655 | mRNA | 0.48 | 3 | NC_007127.7 | 29558530 ~ 29577708 (+) |
| grasscarp (Ctenopharyngodon idella) | TU12167 | True | 234 | lncRNA | 0.41 | 1 | CI01000000 | 17015340 ~ 17015573 (+) |
| striped catfish (Pangasianodon hypophthalmus) | TU12167 | False | 2753 | TUCP | 0.38 | 3 | NC_047595.1 | 18695054 ~ 18700986 (-) |
