RNA id: TU210082


Basic Information

Item Value
RNA id TU210082
length 328
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G184989
representative True

Chromosome Information

Item Value
chromosome id CI01000040
NCBI id null
chromosome length 6879596
location 2542805 ~ 2543132 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GACATACAGCGTAAGCATTTTGGAGAATGCGGAAATGCGGTTTTGGCGGAGGCACTTAGAAGACGAACGTTTGTTTATATAAAGCATATACAGTTGTATTTTTTTCGAAAATGACAGATCGTTTCGCTAGATAAGACCCTTATTCCTCGTCTGGTATCGTTTAAAGCCCTTTGAAGCTGCACTGAAACTGTAATTTTGACCTTCAACCGTTTGGAGGCCATTGAAGTCCACTATAAGGAGAAAAATCCTGGAATGTTTTCATTAAAAACCTTAATTTCTTTTCGACTGAAGAAAGAAAGACATGAACATCTTGGATGACATGGGGGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU210080 lncRNA upstream 1394 2541171 ~ 2541411 (+) True G184987
TU210075 lncRNA upstream 100585 2441978 ~ 2442220 (+) True G184982
TU210074 lncRNA upstream 100973 2441611 ~ 2441832 (+) True G184981
TU210072 lncRNA upstream 102804 2439791 ~ 2440001 (+) True G184979
TU210069 lncRNA upstream 107819 2434784 ~ 2434986 (+) True G184976
TU210131 lncRNA downstream 55389 2598521 ~ 2598937 (+) True G185028
TU210132 lncRNA downstream 57298 2600430 ~ 2600652 (+) True G185029
TU210135 lncRNA downstream 59848 2602980 ~ 2603200 (+) True CI01000040_02602517_02603172
TU210190 lncRNA downstream 261131 2804263 ~ 2804512 (+) True G185084
TU210213 lncRNA downstream 287134 2830266 ~ 2830567 (+) True G185105
CI01000040_02475489_02482435.mRNA mRNA upstream 60290 2475489 ~ 2482515 (+) True CI01000040_02475489_02482435
CI01000040_02444252_02460962.mRNA mRNA upstream 81843 2443561 ~ 2460962 (+) True CI01000040_02444252_02460962
CI01000040_02315449_02344137.mRNA mRNA upstream 198492 2315449 ~ 2344313 (+) True CI01000040_02315449_02344137
CI01000040_01882704_01887004.mRNA mRNA upstream 655670 1881793 ~ 1887135 (+) True CI01000040_01882704_01887004
CI01000040_01876498_01878546.mRNA mRNA upstream 663497 1876498 ~ 1879308 (+) True CI01000040_01876498_01878546
CI01000040_02558495_02563310.mRNA mRNA downstream 15251 2558383 ~ 2563546 (+) True CI01000040_02558495_02563310
CI01000040_02602517_02603172.mRNA mRNA downstream 59225 2602357 ~ 2603623 (+) False CI01000040_02602517_02603172
CI01000040_02609749_02611069.mRNA mRNA downstream 66617 2609749 ~ 2611235 (+) True CI01000040_02609749_02611069
CI01000040_02650575_02692600.mRNA mRNA downstream 106411 2649543 ~ 2692671 (+) True CI01000040_02650575_02692600
CI01000040_02889343_02891410.mRNA mRNA downstream 346211 2889343 ~ 2891439 (+) True CI01000040_02889343_02891410
TU208940 other upstream 1306316 1230292 ~ 1236489 (+) True G184003
TU208979 other upstream 1564642 974113 ~ 974246 (+) True G184034
TU208290 other upstream 2265950 197712 ~ 276855 (+) True G183418
TU208294 other upstream 2377883 157543 ~ 164922 (+) True G183420
TU208230 other upstream 2482408 53691 ~ 60397 (+) True G183366
TU210451 other downstream 790446 3333578 ~ 3333983 (+) True G185296
TU211111 other downstream 1195855 3738987 ~ 3739281 (+) True G185884
TU211185 other downstream 1430633 3973765 ~ 3974123 (+) True G185947
TU212953 other downstream 3425913 5969045 ~ 5971732 (+) False G187510
TU212954 other downstream 3425913 5969045 ~ 5971732 (+) False G187510

Expression Profile