RNA id: TU275451


Basic Information

Item Value
RNA id TU275451
length 243
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G242677
representative True

Chromosome Information

Item Value
chromosome id CI01000056
NCBI id null
chromosome length 2086016
location 1053976 ~ 1054218 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TATGAACTTACTGTAATAATTTGAAGACCGGATCAAACACATACATGGGCACTTTGCCGACTCTGCTGTTTCTTTCATCTCACCAACAGTATTTGGTTTTCTGGCAAAAGAAGTAATGTGTAGACCTCATAAGCTTCAATACTCATGTTATCATGCACCTCAAGAGCTTTCTTTGATCACTGAGAGCTGTCATGCTAATGTTCTTAAGCAATTGTAGATGAAAAGAAATACCTGTACTTCACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU275450 lncRNA upstream 167 1053529 ~ 1053809 (+) True G242676
TU275449 lncRNA upstream 593 1053158 ~ 1053383 (+) True G242675
TU275432 lncRNA upstream 22327 1031423 ~ 1031649 (+) True G242663
TU275431 lncRNA upstream 23622 1029938 ~ 1030354 (+) True G242662
TU275430 lncRNA upstream 33346 1020312 ~ 1020630 (+) True G242661
TU275452 lncRNA downstream 203 1054421 ~ 1054746 (+) True G242678
TU275516 lncRNA downstream 128164 1182382 ~ 1182669 (+) True G242740
TU275651 lncRNA downstream 421228 1475446 ~ 1475650 (+) True G242867
TU275740 lncRNA downstream 554377 1608595 ~ 1609136 (+) True G242947
TU275741 lncRNA downstream 555361 1609579 ~ 1609867 (+) True G242948
CI01000056_00601216_00610322.mRNA mRNA upstream 443571 600353 ~ 610405 (+) True CI01000056_00601216_00610322
CI01000056_00376962_00378136.mRNA mRNA upstream 675468 376962 ~ 378508 (+) True CI01000056_00376962_00378136
CI01000056_00349501_00362980.mRNA mRNA upstream 690996 349501 ~ 362980 (+) True CI01000056_00349501_00362980
CI01000056_00256621_00277009.mRNA mRNA upstream 775581 256447 ~ 278395 (+) True CI01000056_00256621_00277009
CI01000056_00233785_00245058.mRNA mRNA upstream 808558 233546 ~ 245418 (+) True CI01000056_00233785_00245058
CI01000056_01059066_01060580.mRNA mRNA downstream 4848 1059066 ~ 1060614 (+) False CI01000056_01059066_01060580
CI01000056_01306290_01314471.mRNA mRNA downstream 251658 1305876 ~ 1314626 (+) True CI01000056_01306290_01314471
CI01000056_01714213_01714936.mRNA mRNA downstream 659724 1713942 ~ 1714975 (+) True CI01000056_01714213_01714936
CI01000056_01720495_01737951.mRNA mRNA downstream 666277 1720495 ~ 1738749 (+) True CI01000056_01720495_01737951
CI01000056_01749027_01767554.mRNA mRNA downstream 694658 1748876 ~ 1767853 (+) True CI01000056_01749027_01767554
TU274694 other upstream 893026 155068 ~ 160950 (+) True G241982
TU275453 other downstream 4671 1058889 ~ 1062844 (+) True CI01000056_01059066_01060580

Expression Profile