RNA id: TU275516



Basic Information


Item Value
RNA id TU275516
length 254
lncRNA type inter_gene
GC content 0.33
exon number 2
gene id G242740
representative True

Chromosome Information


Item Value
chromosome id CI01000056
NCBI id null
chromosome length 2086016
location 1182382 ~ 1182669 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CTGAAATTCCTCCACATTCCTTGAATCTTTTAATTATGTTATGCACTGTTGAAGGTGAAATAAGCAAATGTCTTCCTATCTTTCTTTGAGGAACATTATTTTTAAACATTTCAATAATTTTCTCACATATTTGTTGGCAAACTGGCGATCCTCAGCCATGCTGCTTTTGTACCAAATCATAATTATAATCACCTGTTGACATCACCTGTTTCAAATCACATCATTATTTAACCAATTTACCTGATTACTAGCCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU275452 lncRNA upstream 127636 1054421 ~ 1054746 (+) True G242678
TU275451 lncRNA upstream 128164 1053976 ~ 1054218 (+) True G242677
TU275450 lncRNA upstream 128573 1053529 ~ 1053809 (+) True G242676
TU275449 lncRNA upstream 128999 1053158 ~ 1053383 (+) True G242675
TU275432 lncRNA upstream 150733 1031423 ~ 1031649 (+) True G242663
TU275651 lncRNA downstream 292777 1475446 ~ 1475650 (+) True G242867
TU275740 lncRNA downstream 425926 1608595 ~ 1609136 (+) True G242947
TU275741 lncRNA downstream 426910 1609579 ~ 1609867 (+) True G242948
TU275742 lncRNA downstream 427506 1610175 ~ 1610428 (+) True G242949
TU275703 lncRNA downstream 431063 1613732 ~ 1614101 (+) True G242913
CI01000056_01059066_01060580.mRNA mRNA upstream 121768 1059066 ~ 1060614 (+) False CI01000056_01059066_01060580
CI01000056_00601216_00610322.mRNA mRNA upstream 571977 600353 ~ 610405 (+) True CI01000056_00601216_00610322
CI01000056_00376962_00378136.mRNA mRNA upstream 803874 376962 ~ 378508 (+) True CI01000056_00376962_00378136
CI01000056_00349501_00362980.mRNA mRNA upstream 819402 349501 ~ 362980 (+) True CI01000056_00349501_00362980
CI01000056_00256621_00277009.mRNA mRNA upstream 903987 256447 ~ 278395 (+) True CI01000056_00256621_00277009
CI01000056_01306290_01314471.mRNA mRNA downstream 123207 1305876 ~ 1314626 (+) True CI01000056_01306290_01314471
CI01000056_01714213_01714936.mRNA mRNA downstream 531273 1713942 ~ 1714975 (+) True CI01000056_01714213_01714936
CI01000056_01720495_01737951.mRNA mRNA downstream 537826 1720495 ~ 1738749 (+) True CI01000056_01720495_01737951
CI01000056_01749027_01767554.mRNA mRNA downstream 566207 1748876 ~ 1767853 (+) True CI01000056_01749027_01767554
CI01000056_01780748_01797031.mRNA mRNA downstream 598079 1780748 ~ 1797042 (+) True CI01000056_01780748_01797031
TU275453 other upstream 119538 1058889 ~ 1062844 (+) True CI01000056_01059066_01060580
TU274694 other upstream 1021432 155068 ~ 160950 (+) True G241982

Expression Profile