RNA id: TU322660



Basic Information


Item Value
RNA id TU322660
length 1706
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G284694
representative True

Chromosome Information


Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 1656852 ~ 1696292 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GCAGAACAGTCAGGGTGTTGATGGAGAGGAGATCAGTTCAAACCATCCCAGCACTGCCACTGTTATTAATAGTCTCCAAGCTGACATTCAGCCAAACAAAGGGCACGTGGAGAATAGACTGCTGATGGAGTGGATATAGAGACAGGCTGGTGTCAGTTGCCTTGGTGTTCGTGTTTGAACAAGGTTTGTGTGTGTGTGTTGCATGTTAATTCACTCCAAAGTAAAGTGATTCTCATTGTCTTTGAAGATGTCAGGAGGAGATGAAAGAGATCTCTCGTGCTCCCTCTCTCTCTTTCTATTTGCACATATCCCAACACTGACGTGCTGGCTGCAGCACTGTGTTCTTTATTGAGGGTTTTGCATAAGGGACTGTCTGCGCTCACTTTGGCCAGCAATAGAGATGCACAAAAAGAAATATTTTCAAATCTTTTTTATTTTCAATTCACTTGACCCTAATCAGACACATTTCTTAAGAGGTGTTTACTCAAGACACATTCAAAAATATGTGTGCAAACAGTGTTCATTTTTACATTGTTTTTAGTCAGTTTTTGTCTTTTGACACAAATATCCTTTACATGTAGTCAATATTTTATCAGGTCAGATTCATTAAAGGGTTAGTTCACCCAAAAATGAAAATTCTGTCATTAATTACTCACCCTCATGTTGTTCCACACCTGTAAGACCTTCGTTCATCTTCGGAACACAAATTAAGATATTTTTGATAAAATCCGATGGCTCAGTGAGGCTTTCATTGGCAGCAAGATGATTAACACTTTCAGATGCCCAGAAAGCTACTAAAGACATATTTAAAACAATTTATGTGACTACAGTGGTTCAACCTTAATGTTATGAAGCGACGAGAATACTTTTTGTGTGCCAAAAAAACAAAATAATGACTTTATTCAACAATCTCTTCTCTTCCCTGTCAGTCTCCTATGCTGCTCACGTTGTAAACACAGTGCAGTGCTTCCTGGTTCTACGTCAGAATGCCGACTCATTATTGGTCAGCTCCTGTGTCAGCATCACACGCATTCGTCGTGGTGCACATGTGTACAGCGTCGACCAATACTGTCACATAGACTATTTTAACGCTGTCTACAGGGAGGTCAGAAAGCTCTCAGATTTCATCAAAAATATCTTAATTTGTGTTCCGAAGATGAACGAAGGACTTACGGGTTTGGAACGACATGAAGGTGAGTAATTAATGACATTTTTGGGTGAACTAACCCTTTAAGTCATCCTATGGAACATTTGGAAGTTGGGGTCTGAGGACCCCTAGTTGAGAACCACTATTCTAAACTGAGATTATTTGGATGAAAATTCTCCATTCGATCTCATTTGAGATGTTAAATTTATCTCACTTGTTATTTTTCTTCCATACAGCTATTTTCCTCCGTGTATAAGGTTAAACATGGATATGGCCATATTAGCTTTTAAAAGGAGATAAACAGGCTCATTCTGCCCCCAGGAGGACTGTGTGCCCGACACCCCACTGTAGAGTTATTGATAGAATATCTTGGAGGGAATGCTGATCTTTGTATTGGCTTCAATCATACAATGAAGATCCTTCAGGCAAGAGAAGGCCTTATAACACAGAGGAATTGCTTCTTATTTGGTGCTTTTTCTCAGGGCCTCAATCACTCACTCATTCATTCAATCTAAGAAGCAAAATCTGAAACAATGCCCAGCGATGACTGAGATTCCTT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU322663 lncRNA upstream 66343 1587151 ~ 1590509 (+) True G284696
TU322524 lncRNA upstream 214064 1381743 ~ 1442788 (+) True G284559
TU322515 lncRNA upstream 323137 1333476 ~ 1333715 (+) True G284550
TU322426 lncRNA upstream 587694 1068520 ~ 1069158 (+) True G284464
TU322243 lncRNA upstream 782456 866910 ~ 867085 (+) False G284306
TU322826 lncRNA downstream 135376 1831668 ~ 1831971 (+) True G284851
TU322834 lncRNA downstream 184298 1880590 ~ 1880807 (+) True G284859
TU322845 lncRNA downstream 212844 1909136 ~ 1909363 (+) True G284867
TU322847 lncRNA downstream 214720 1911012 ~ 1911361 (+) True G284869
TU322849 lncRNA downstream 217703 1913995 ~ 1914302 (+) True G284871
CI01000072_01413987_01424254.mRNA mRNA upstream 232598 1413987 ~ 1424254 (+) True CI01000072_01413987_01424254
CI01000072_01406735_01412673.mRNA mRNA upstream 243732 1406735 ~ 1413120 (+) True CI01000072_01406735_01412673
CI01000072_01391395_01404483.mRNA mRNA upstream 250779 1389526 ~ 1406073 (+) True CI01000072_01391395_01404483
CI01000072_01351729_01362820.mRNA mRNA upstream 293813 1350472 ~ 1363039 (+) True CI01000072_01351729_01362820
CI01000072_01334982_01348258.mRNA mRNA upstream 308594 1334982 ~ 1348258 (+) True CI01000072_01334982_01348258
CI01000072_01724644_01730223.mRNA mRNA downstream 28160 1724452 ~ 1731160 (+) True CI01000072_01724644_01730223
CI01000072_01762899_01783522.mRNA mRNA downstream 66275 1762567 ~ 1783960 (+) True CI01000072_01762899_01783522
CI01000072_01864149_01879788.mRNA mRNA downstream 167619 1863911 ~ 1880204 (+) True CI01000072_01864149_01879788
CI01000072_02000581_02009243.mRNA mRNA downstream 303348 1999640 ~ 2009426 (+) True CI01000072_02000581_02009243
CI01000072_02016536_02023336.mRNA mRNA downstream 320130 2016422 ~ 2023361 (+) True CI01000072_02016536_02023336
TU321805 other upstream 1305564 349124 ~ 351288 (+) True CI01000072_00338411_00351144
TU322715 other downstream 285238 1981530 ~ 1985140 (+) True G284742
TU323494 other downstream 2273965 3970257 ~ 3976214 (+) True G285428
TU324691 other downstream 2472812 4169104 ~ 4172093 (+) False G286470
TU324692 other downstream 2472812 4169104 ~ 4175651 (+) True G286470
TU324705 other downstream 2528546 4232318 ~ 4232421 (+) False G286474

Expression Profile