RNA id: CI01180000_00737754_00743866.mRNA



Basic Information


Item Value
RNA id CI01180000_00737754_00743866.mRNA
length 3305
RNA type mRNA
GC content 0.36
exon number 3
gene id CI01180000_00737754_00743866
representative True

Chromosome Information


Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 735310 ~ 744211 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GCTATAAAAGCAGCAGGGTATCTGACCACTACACCAGCACACACACACACATGAACATCGTCCACTCCCAGACTGCATGGACACGCCCTTACACAGCATCCACTGATCAACCCCGGCTCACTTCATCTCGCACAGTGCATCTTCCCATCCTTTCCGTTCACTTTCAGTTCCAAGATATTCAAGATTTTTATTTGTCATGAATAATGTTGACTTTTGTTCCTCTCTTGTAAGTCGCTTTGGATAAAAGAATCTGCTAAATGTTTTGAGCGGTTTTGATTAGAAAAAAGGATTAGAAGTCAATGAACAAATAGCAATAAGGCAACGAGTAGCCAAATGTTTTTTGACTTCTAATCCTTCATACTTCATACAACCGTTCAAACACACTTTAAGGGGCCATTTACACAAAACTAAAAACGTAAAACTTTTTATGCATTCATTCACGCGAAAATGGCGTTTTGGGTGCCTGAAAATGGAAATGTTGAAATCGGGTTTTAAAGTGCAAGTTTTTTAAAACTATAGCGTTGTCGTTTCCATGTAAACTACAATAACACGAATTTGTGAAAACGGTGACGCCATGCACATTACATGTTCAGTCTTTAGGCGCGTAGTGTTTCTCTACAAAGTGACATCGCCATCTACTGGCCTGGCATGAATAATACAGCGTTTTTAGTCGTTTTCACAGATCCGTGTGAACCGGGATCGTTTTGATAATGGTGTCGTCTGTACGCAAAAAACATCATTGTTGTGTAAACATAACCTTAATTTAAAAAAATCAATTAATGCAGAAATTGGAGTTTAAGGGGCCGTTTACACTACACCGTTTTCAACTAAAACCAGAAAACTTTTTATGCATTTTGGACGTTCATTTACACGACAATGCCGTTTTGGGTGCCTGAAAATGGAAACTTTTGAAAACGGGTTTTAAAGTTTTTGAAAACTATAGCGTTATCATCTCCATGTAAATTACAAATACACAAATTTGTGAAAATGGTGACGTAATGCGCATTATATGTTCAGTCTATAGACGCGAAGTGTTTCTTAACAAAGTGACATCGCCATCTACTGGCCTGGCATGAATAGTACAGCGTTTTTAGTTGTTTTTGTGGATCCGTGTGAACCGGGATCGTTTTGATAATGGTTTCGTCTGTACGCAAAAAAAAAGCAAAGGAAAAACTTCTCCGTTTTTAGTACATCATTGTTGTGTAAATATACCCTTAATTTTAAAAAATCAATTAACGCAGAAATTTGAGTTTAAGGGGCCGTTAGCACGACATCGTTTTCAACTAAAACCGGAAAACATTTTATGCGTTTTGGACGTTTATTTATATGACAACAGCGTTTTGGGGGCCTGAAGATGGAAACTTTTGAAATTAGGTTTCAAAGTGCAAGTTTTTGAAAACAATACCGTTATCGTCTCCATGTAATCTACAAAAACACAAATTTGTGAAAACGGTGACGTCATGCACATTACATGTTCAGTCTATAGATGCGTAGTGTTTCTTTACAAATTGACATCGCCATCTACTGGCCTGGCATGAATAATACAGCGTTTTTAGTCGTTTTTGCAGATTCGTGTGAACAGGATCGTTTTGATAATGGTTTGGTCTGTACACAAAAAAAAAGCAATGGAAAAACTTTTCCATTTTTTGCACATTATTGTTGTGTAAACATACCCTAAATTTAAAAAAAATCTATTAACTTAGAAATTTGAGTTTAAGTAGCCGTTTACACGACACCATTTTCAACTAAAACTGGAAAACTTTGTATGCGTTTTGGACTTTCATTTACACGACAACAGCGTTTTGAATGCCTGAAAATGGAAACTTTTGAAAACGGGTTTTTTGAATACCGTTATCGTCTCCATGTAAACTACAAAAAAACACAAATTTGTGAAAACGGTGTTTACGTGTGTTACGTGTTCAGTCGGCGGGTAGTGTTTCTTTACAAAGTGACATCGCCAACTACTGGCCTGGCATGAATAATACAGCATTTTTAATAATTTTCGCAGATCCGTGTGAACGGGATAGTTTTGACAACTTTGTCATCTGTACGCGCAAAATGCAATGGAGTAACTTTTCCATTTTCAGTACATTGTTGTTGTGTAAGTCAACACGCAAACTATTTAACTCATAATACTGCTGTATTTCTGAATTTAAATAGGAAATTCAATGAAAAAATATGAAAGGTGGGACTTTATTTTTTATTAGTTGAGAATTTATTGAATCAGATAAATTGGGAAAGTCATGAAAATTCTGTGATGTCAGGCATTTTTATTCCATGTTGACTTTAACGAAGGACATGTTCTTGGATCAACACGCTTGTTGGTCTTGGAGCAACATTCCGATCGACAAATCAGATTTTAGGGTTACAACATTTTTATCAACCAATTATTTGCTTCTAATTATAAGTGCAAAGGATGTTTGATAGAAATGTTATTCAAGGACCATGTCCATAGCCTGCATGGCAAATGGTGGTCAAACACCAACCCCAGTGGCAAACAGGTGGCTCCTTAACACATTCTTTGTCCTCAGAAGCAACACAAAGACACACTTATTCCTATTCTCAGGCGATGTTAGGGTAAGATGCGTGAGTGAGAAGTCTTGTGCGACTGCTTTTGCAACCATGTGTGAGAACAGCACTTTGATGTCGAATTTCACGGCATTCTTACAATCGGAATCATTTAAACGCGCGCATTCCTTCGCTTCTGCCATGTGCTCGAATCCAGCAAACAACTTCTTTTGTGATCGAGGACACTTGCTCAAGTGTTCTCGCGCACTTCTGAGTGGAATACCGATATTGTACATTATTTTGAGCGTCACTCTTTTGTCTTTGCCCGACACTGATAGCGAATTCCCGCGAAACTCTTTGAGTGAACAAATCGAATTTAAAAATGTTTCAACGTTCCATTCGTTTGTGATTGGATTCTATTGTCTGTTCACATTTGTATATGTGGGTAGTTGATTAATAACCTGAATATGAACTTTTTAACATGTTTTTTTTAATTATTATTATTATTATTAATCATACTAAAAGATCATATATGATTGGTTAATACACACATATTTTCTAGTTCACATCATAACGTTACATTTATTTGAATTTATATACTTTTAGATGCTATTTTTATTTTATTTTTAGTTTAAGCGACTTGAGACAATTTAAACCTCATGTCTCTCAATTAATAGAGGTCAAAAATGTACGGGAAATGTTTAAAAATAGTTTTGGATGGAGCATGTCAACTATCAACATTTATGACTGAACTATTAAAGATTGATATTTGCCAATATCTAAATCTTTTTAATTGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU799371 lncRNA upstream 12853 722123 ~ 722457 (+) True G678712
TU799313 lncRNA upstream 20464 714434 ~ 714846 (+) True G678654
TU799362 lncRNA upstream 36256 698675 ~ 699054 (+) True G678703
TU799289 lncRNA upstream 50267 677874 ~ 685043 (+) True G678632
TU799246 lncRNA upstream 184136 503871 ~ 551174 (+) True G678595
TU799299 lncRNA downstream 3054 747265 ~ 777004 (+) True G678640
TU799290 lncRNA downstream 33396 777607 ~ 779619 (+) False G678633
TU799292 lncRNA downstream 33396 777607 ~ 779619 (+) True G678633
TU799286 lncRNA downstream 35583 779794 ~ 780590 (+) False G678629
TU799285 lncRNA downstream 35711 779922 ~ 780590 (+) True G678629
CI01180000_00661446_00671602.mRNA mRNA upstream 63122 661109 ~ 672188 (+) True CI01180000_00661446_00671602
CI01180000_00427700_00437883.mRNA mRNA upstream 296844 427650 ~ 438466 (+) True CI01180000_00427700_00437883
CI01180000_00368639_00375465.mRNA mRNA upstream 359063 368639 ~ 376247 (+) True CI01180000_00368639_00375465
CI01180000_00361420_00364335.mRNA mRNA upstream 370184 361420 ~ 365126 (+) True CI01180000_00361420_00364335
CI01180000_00306160_00314770.mRNA mRNA upstream 419566 306160 ~ 315744 (+) True CI01180000_00306160_00314770
CI01180000_00765917_00776252.mRNA mRNA downstream 21586 765797 ~ 776911 (+) True CI01180000_00765917_00776252
CI01180000_00812535_00858607.mRNA mRNA downstream 67646 811857 ~ 859005 (+) True CI01180000_00812535_00858607
CI01180000_00862066_00867985.mRNA mRNA downstream 116535 860746 ~ 868112 (+) True CI01180000_00862066_00867985
CI01180000_00947514_00949868.mRNA mRNA downstream 202210 946421 ~ 950906 (+) True CI01180000_00947514_00949868
CI01180000_00955725_01050852.mRNA mRNA downstream 210711 954922 ~ 1051826 (+) True CI01180000_00955725_01050852
TU799069 other upstream 583658 147934 ~ 151652 (+) True G678440
TU799410 other downstream 315632 1059843 ~ 1066091 (+) True G678751
TU799296 other downstream 405340 1149551 ~ 1155672 (+) True G678637
TU799630 other downstream 774142 1518353 ~ 1556151 (+) True G678946
TU799769 other downstream 1050959 1795170 ~ 1799433 (+) True G679076
TU800043 other downstream 1644656 2388867 ~ 2397360 (+) True G679324

Expression Profile