RNA id: CI01180000_00765917_00776252.mRNA


Basic Information

Item Value
RNA id CI01180000_00765917_00776252.mRNA
length 1826
RNA type mRNA
GC content 0.53
exon number 4
gene id CI01180000_00765917_00776252
representative True

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 765797 ~ 776911 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGTTTAAATGATTGCTACCAGATTACTACTTTTGTGCAGCCATTCGTACTTTTTTTTAAAAAATTTTATTTTATTTCTCTCCTCAGAAGACGTCCTTGATTTAATGGGTCCAATCATCGGGATGTCGCCGGATAAGAAAGCAGAATCCCCGGGCGTGCTGGCGGAGCGGACGGACCTGCGCGGGGTTTGTGGGACGTTGCCCGAGGCCGAGTGCGCCGCCAGCCCTCTCGCCACCAGCTTGGACCGCAGCTCCAGCTCAGGAGACGAAGAACTCACCAACCTCAACTGGCTCCACGAGAACCTGCTCCAGAACTTCACGCTGGGAGGCCCCGAGGCCCAGTCCAGGCCCAGTCCGCTCTTCGATATCGAGGGCAACCACGGCAGCTCCGTCATCTCCTCGGCGGCATCCCATGGCGGAGAGTCTGTAAAGTCAAAGCCGCCGTTTTCCTTCTCTCTGCTCATATACATGGCCATCGAACAGTCGCCCAGCAAGTCGCTGCCGGTGAAGGACATCTACGGCTGGATTCTGGAGCACTTTCCCTACTTCTCCAGCGCCCCTACTGGCTGGAAGAACTCGGTGCGGCACAACCTCTCCCTCAACAAGTGCTTCCGCAAGGTGGAGAGGAGCCTTGGGAAGGACTGCTCTCTGAAAGAGTCTGACATTGATGCCGCGACTGCTATGATGCTGTTAAACTCTGCCCCCGGACACCACAGTGACCCCGGTGACCCGGACAGCCCTATAGACCTCTCACGCCCGGACTCGGTCCTAGTGAGCAGCGACCCAAAGCAGGACCACAACTACAGCAGCTCCTCCTTCCAGCGCTGCTCGTCTCGCTCTTCCTCGTCCTCCTCGTCCTCACTGTCATCCCTAGACGAGGCAGGCTGCGACTCCGGCCAGGGCCGCCGCGCCGGCAGCGAGGGTTTCCACAGCGACGAGGACTCGGAGGAGGAGAGGAACTCACGCCTGCCCTCGCTTCCCGTTCGCCGCCCGCTCACCGTCAAGTGCCCTCTTCCGGGTAAACGGGCCCGCCACGAGTCCAAACCGGAACTGGACGAGGAGTTGAAAGAGGCGGCCGGGTCTCTCTTACACCTGGCCGGGATCCGTTCCGGCCTGGATCTCTCTAAGCGAACGGCCAAGAGTAAAAAACTGGAAAAGCACCGAAAATGAAGCCGAAAAATCCCTAGACTGTGTATCAGTGACTGTGCCTCCCATCATGGAAACCCTCTCTCTTGTTTTGTTTTTTTTTATCTACATTTTTCATTTTATATGAGAGATTTTCCCTCCCTGACTCAAACTACGGCAATAGCGACTTTCACGCGGAGGTGAACGAAGCCATACTGAGACTTTGGAGCGCGAATGGAGCCGTTCAGGATTTCTCTCAGTGAAGTTGGATAGGGAGAGACTGATGTGTTTTCTCTTAAACGTTTGCATGCTTCCTCTTTAGGTGAGTGTCCTACTCTTCCAAGTGAATCTGTGGCGTTTCTACAGAGAACGAGTGCATGTCCGTGTTGTTCGAAGCACTAACCTCTCCCGTCGTCCACTTTGTGAACGCGCTCCAGAAAATGGAAAACGAGAATTACGTCAAGAGTTCCCAGTTTTTTGTTTTGTTTTTGAAGTACACAACAAAGAAATGCAATAATTATCATCAGGCGGCTGGCGTTAAGTTCTTTCTCTTCATCAGAGGCACTGGATATCATTGCGGATGGCATGCAGAAAGGATTTATGGATAACGGATGACTTTTTTTCTCCATCAGTCGTGATATTTATGGGGTAAATCTCATGAAAATACATCAGGGTCACACTTCACTCCAGAATCAAAAAGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU799371 lncRNA upstream 43340 722123 ~ 722457 (+) True G678712
TU799313 lncRNA upstream 50951 714434 ~ 714846 (+) True G678654
TU799362 lncRNA upstream 66743 698675 ~ 699054 (+) True G678703
TU799289 lncRNA upstream 80754 677874 ~ 685043 (+) True G678632
TU799261 lncRNA upstream 232149 533150 ~ 533648 (+) True G678608
TU799290 lncRNA downstream 696 777607 ~ 779619 (+) False G678633
TU799292 lncRNA downstream 696 777607 ~ 779619 (+) True G678633
TU799286 lncRNA downstream 2883 779794 ~ 780590 (+) False G678629
TU799285 lncRNA downstream 3011 779922 ~ 780590 (+) True G678629
TU799376 lncRNA downstream 7004 783915 ~ 784202 (+) True G678717
CI01180000_00737754_00743866.mRNA mRNA upstream 21586 735310 ~ 744211 (+) True CI01180000_00737754_00743866
CI01180000_00661446_00671602.mRNA mRNA upstream 93609 661109 ~ 672188 (+) True CI01180000_00661446_00671602
CI01180000_00427700_00437883.mRNA mRNA upstream 327331 427650 ~ 438466 (+) True CI01180000_00427700_00437883
CI01180000_00368639_00375465.mRNA mRNA upstream 389550 368639 ~ 376247 (+) True CI01180000_00368639_00375465
CI01180000_00361420_00364335.mRNA mRNA upstream 400671 361420 ~ 365126 (+) True CI01180000_00361420_00364335
CI01180000_00812535_00858607.mRNA mRNA downstream 34946 811857 ~ 859005 (+) True CI01180000_00812535_00858607
CI01180000_00862066_00867985.mRNA mRNA downstream 83835 860746 ~ 868112 (+) True CI01180000_00862066_00867985
CI01180000_00947514_00949868.mRNA mRNA downstream 169510 946421 ~ 950906 (+) True CI01180000_00947514_00949868
CI01180000_00955725_01050852.mRNA mRNA downstream 178011 954922 ~ 1051826 (+) True CI01180000_00955725_01050852
CI01180000_01196818_01224406.mRNA mRNA downstream 419875 1196786 ~ 1224915 (+) True CI01180000_01196818_01224406
TU799069 other upstream 614145 147934 ~ 151652 (+) True G678440
TU799410 other downstream 282932 1059843 ~ 1066091 (+) True G678751
TU799296 other downstream 372640 1149551 ~ 1155672 (+) True G678637
TU799630 other downstream 741442 1518353 ~ 1556151 (+) True G678946
TU799769 other downstream 1018259 1795170 ~ 1799433 (+) True G679076
TU800043 other downstream 1611956 2388867 ~ 2397360 (+) True G679324

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00012267 True 1255 mRNA 0.52 5 NC_007124.7 48482256 ~ 48551810 (+)