RNA id: TU799899


Basic Information

Item Value
RNA id TU799899
length 268
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G679202
representative True

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 2098541 ~ 2098808 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGTTGAGACCAAGACAAGGCCAAGACTTTGTGGGTTTGAGACCAAGACAAGACCAAGACTTTGAGGGTTTGAGACCAAGATAAGACCAAGACTTTGAGGGGTTGAGACCAAGACAAGGCCAAGACTTTGTGGGTTTGAGACCAAGACAAGACCAAGACAAGACTTTGAGGGGTTGAGACCAAGACAAGATCAAGGCCAGAATAAAAAATAAAAAAACAAGATACTAAAAAGCACTTTTTTGCAATCATATCTTAAATTTTTGTGGGGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU799862 lncRNA upstream 37530 2051527 ~ 2061011 (+) True G679165
TU799857 lncRNA upstream 67510 2030738 ~ 2031031 (+) True G679160
TU799774 lncRNA upstream 289401 1808882 ~ 1809140 (+) True G679080
TU799770 lncRNA upstream 290486 1803405 ~ 1808055 (+) True G679077
TU799763 lncRNA upstream 318843 1778590 ~ 1779698 (+) True G679072
TU799901 lncRNA downstream 890 2099698 ~ 2106093 (+) True G679204
TU799738 lncRNA downstream 22461 2121269 ~ 2127987 (+) True G679050
TU799925 lncRNA downstream 98381 2197189 ~ 2201435 (+) True G679228
TU799915 lncRNA downstream 111981 2210789 ~ 2214934 (+) True G679218
TU799735 lncRNA downstream 139682 2238490 ~ 2241873 (+) True G679047
CI01180000_01942458_01949580.mRNA mRNA upstream 147894 1942127 ~ 1950647 (+) True CI01180000_01942458_01949580
CI01180000_01915282_01926129.mRNA mRNA upstream 172272 1914892 ~ 1926269 (+) True CI01180000_01915282_01926129
CI01180000_01865632_01870994.mRNA mRNA upstream 227452 1865509 ~ 1871089 (+) True CI01180000_01865632_01870994
CI01180000_01832263_01834405.mRNA mRNA upstream 263542 1832013 ~ 1834999 (+) True CI01180000_01832263_01834405
CI01180000_01828938_01830221.mRNA mRNA upstream 267727 1828938 ~ 1830814 (+) True CI01180000_01828938_01830221
CI01180000_02158036_02158965.mRNA mRNA downstream 58542 2157350 ~ 2159222 (+) True CI01180000_02158036_02158965
CI01180000_02322594_02323609.mRNA mRNA downstream 221544 2320352 ~ 2323752 (+) True CI01180000_02322594_02323609
CI01180000_02362001_02362428.mRNA mRNA downstream 263152 2361960 ~ 2363530 (+) True CI01180000_02362001_02362428
CI01180000_02541296_02567509.mRNA mRNA downstream 442488 2541296 ~ 2567783 (+) True CI01180000_02541296_02567509
CI01180000_02574027_02588521.mRNA mRNA downstream 475219 2574027 ~ 2588824 (+) True CI01180000_02574027_02588521
TU799769 other upstream 299108 1795170 ~ 1799433 (+) True G679076
TU799630 other upstream 542390 1518353 ~ 1556151 (+) True G678946
TU799296 other upstream 942869 1149551 ~ 1155672 (+) True G678637
TU799410 other upstream 1032450 1059843 ~ 1066091 (+) True G678751
TU799069 other upstream 1946889 147934 ~ 151652 (+) True G678440
TU800043 other downstream 290059 2388867 ~ 2397360 (+) True G679324
TU801024 other downstream 590954 2693355 ~ 2694234 (+) True G680192
TU801022 other downstream 595599 2694407 ~ 2695436 (+) True G680192
TU801631 other downstream 1454469 3553277 ~ 3563250 (+) False G680723
TU801630 other downstream 1454754 3553562 ~ 3563250 (+) True G680723

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
eurasian perch (Perca fluviatilis) TU203208 True 1620 lncRNA 0.53 2 NC_053125.1 38497665 ~ 38501382 (-)