RNA id: TU799901


Basic Information

Item Value
RNA id TU799901
length 291
lncRNA type inter_gene
GC content 0.32
exon number 2
gene id G679204
representative True

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 2099698 ~ 2106093 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAAAGACAGTTACTTTGCACTTGTTTGTGATGATCTATGTCGAGGGAGATACATAAAGGATTTGTGATGGTGACTAAATTGAACAGGAAAGATATTGATCAGCCGTATTGATTCATTTTGATATACACATAAAGTTTGAGCATTTTATATTCCTCGGATGTTAAATGAGATACTGAATCTTGTTTATCTATTTTTACAGTCAATGAGGCCTGTGTGTCTCACAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU799899 lncRNA upstream 890 2098541 ~ 2098808 (+) True G679202
TU799862 lncRNA upstream 38687 2051527 ~ 2061011 (+) True G679165
TU799857 lncRNA upstream 68667 2030738 ~ 2031031 (+) True G679160
TU799774 lncRNA upstream 290558 1808882 ~ 1809140 (+) True G679080
TU799770 lncRNA upstream 291643 1803405 ~ 1808055 (+) True G679077
TU799738 lncRNA downstream 15176 2121269 ~ 2127987 (+) True G679050
TU799925 lncRNA downstream 91096 2197189 ~ 2201435 (+) True G679228
TU799915 lncRNA downstream 104696 2210789 ~ 2214934 (+) True G679218
TU799735 lncRNA downstream 132397 2238490 ~ 2241873 (+) True G679047
TU800066 lncRNA downstream 336182 2442275 ~ 2442571 (+) True G679346
CI01180000_01942458_01949580.mRNA mRNA upstream 149051 1942127 ~ 1950647 (+) True CI01180000_01942458_01949580
CI01180000_01915282_01926129.mRNA mRNA upstream 173429 1914892 ~ 1926269 (+) True CI01180000_01915282_01926129
CI01180000_01865632_01870994.mRNA mRNA upstream 228609 1865509 ~ 1871089 (+) True CI01180000_01865632_01870994
CI01180000_01832263_01834405.mRNA mRNA upstream 264699 1832013 ~ 1834999 (+) True CI01180000_01832263_01834405
CI01180000_01828938_01830221.mRNA mRNA upstream 268884 1828938 ~ 1830814 (+) True CI01180000_01828938_01830221
CI01180000_02158036_02158965.mRNA mRNA downstream 51257 2157350 ~ 2159222 (+) True CI01180000_02158036_02158965
CI01180000_02322594_02323609.mRNA mRNA downstream 214259 2320352 ~ 2323752 (+) True CI01180000_02322594_02323609
CI01180000_02362001_02362428.mRNA mRNA downstream 255867 2361960 ~ 2363530 (+) True CI01180000_02362001_02362428
CI01180000_02541296_02567509.mRNA mRNA downstream 435203 2541296 ~ 2567783 (+) True CI01180000_02541296_02567509
CI01180000_02574027_02588521.mRNA mRNA downstream 467934 2574027 ~ 2588824 (+) True CI01180000_02574027_02588521
TU799769 other upstream 300265 1795170 ~ 1799433 (+) True G679076
TU799630 other upstream 543547 1518353 ~ 1556151 (+) True G678946
TU799296 other upstream 944026 1149551 ~ 1155672 (+) True G678637
TU799410 other upstream 1033607 1059843 ~ 1066091 (+) True G678751
TU799069 other upstream 1948046 147934 ~ 151652 (+) True G678440
TU800043 other downstream 282774 2388867 ~ 2397360 (+) True G679324
TU801024 other downstream 583669 2693355 ~ 2694234 (+) True G680192
TU801022 other downstream 588314 2694407 ~ 2695436 (+) True G680192
TU801631 other downstream 1447184 3553277 ~ 3563250 (+) False G680723
TU801630 other downstream 1447469 3553562 ~ 3563250 (+) True G680723

Expression Profile