RNA id: TU803987



Basic Information


Item Value
RNA id TU803987
length 1259
lncRNA type antisense_over
GC content 0.46
exon number 7
gene id G682827
representative True

Chromosome Information


Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 3907576 ~ 3916491 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GAACTGAGGGATTTGAAATTTTGCAAAAGCGAAGCAGAGATGGCGTTTATTATTCAACAGGTATGTAAGGTATTTAATTGAACCGATAAATTGCCATAATTGTAAAGCATTATCGATTATGAAGGGTCACATTCATCCGCTCAGTCACGCAGAGCCGAAGCACAACCAAAACAATGTTCTTCCGCAAAATGCAGTTTTGTTTTTTTTAACCAAAAGTTATATAGTGTACCTTTAAACAAACAAATCTGTCAAATGTCACACTCAAAAACTACTCAAGTAATTTTTCTGTTAGCTCTGACAGTTACCATTCTCCCCAACAGTCATGGGTATGTTGACCTCGAGGTAAGAACCTGCTCCTACATTCACATGGACCGCATTAGTCTCCCTATTCTTGGTGAATAGCAAATCTATTGTTGCATCAGCTATGATGTTCATACGCAGCTCAAAGGCGAGGATCTGTCGGGGTTTGCCTGGTGTGGCAACATCGCTCACTTTCATTGGCTGATAGTCTGCAGGCAGGAAGAACTTCCATAGGCTGTCTCTCTGTCTGTCAGCCCATGGGCCGTAGTTAAAGTCTGTTCCTTTGCCACATACAATGTCCAAACCCCAGCATGGAGGCAAGTCCTGTAGTTTGGCATCTTCAGAACATGCTTCTGTATCTCCATTCTCCAGTTCCTCTGGGACCAAACCTGGTTCATCCTGGTAGTAGTAGATGTCCACATCATTGGACTGCATGACCACAAAGCCCTCCCCCATGAGCCTGGGAGGTTCATCATTCTGAAGGCCCAGGTATCGCGGGCTGGGCACCAGCATGACGCGGACGTTCTCCAGAGAGCCCTTTACAATGTGCATGAACTGATCCAAGTGGCTGCTGGGTGGTTTGGTGGCATACGTCAGGAAGGCGTCATCAAAATTCATACAGAGGGTTTGAGGAAGATGGTGATTACCAAACGCTACACGACCTGTACTGATGTTGACTTTGATGACAGGGATGAGAGACCTCCAGGAAGACGAGGGGTCCGGAGTCTCAGTTTTGATGTGAACACTCTCCAAGGATTTATCCCTTTGCTCTCGCCCTTTCTCCTCATCCCGGTGAAGTGGGATAAGGGTGGGCTCTAGGCCAAATGTTTCCTGGAGCCGAGCGTACAGATCCGTGCGATTATACACATGGAACTCAAAGCCGTTAACAGTGACATAGAGCCGTGTCTCAGCCTTCGGGTCTGGAAACACAGTAGAACCATTAAAATATCATTAATAAT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU803935 lncRNA downstream 28482 3879663 ~ 3879870 (-) True G682802
TU803934 lncRNA downstream 28898 3879242 ~ 3879454 (-) True G682801
TU803933 lncRNA downstream 29612 3878482 ~ 3878740 (-) True G682800
TU803932 lncRNA downstream 30020 3878104 ~ 3878332 (-) True G682799
TU803915 lncRNA downstream 59298 3848801 ~ 3849054 (-) True G682783
TU803948 lncRNA upstream 24195 3940686 ~ 3947649 (-) False G682807
TU803949 lncRNA upstream 29496 3945987 ~ 3946542 (-) True G682807
TU803943 lncRNA upstream 60605 3977096 ~ 3979869 (-) False G682806
TU803942 lncRNA upstream 61039 3977530 ~ 3979869 (-) False G682806
TU803940 lncRNA upstream 61141 3977632 ~ 3979869 (-) True G682806
CI01180000_03824786_03831186.mRNA mRNA downstream 77166 3824669 ~ 3831186 (-) True CI01180000_03824786_03831186
CI01180000_03813694_03819279.mRNA mRNA downstream 89035 3813348 ~ 3819317 (-) True CI01180000_03813694_03819279
CI01180000_03789351_03795877.mRNA mRNA downstream 112155 3788671 ~ 3796197 (-) True CI01180000_03789351_03795877
CI01180000_03766003_03784047.mRNA mRNA downstream 123946 3765731 ~ 3784406 (-) True CI01180000_03766003_03784047
CI01180000_03695198_03697316.mRNA mRNA downstream 211036 3694823 ~ 3697316 (-) True CI01180000_03695198_03697316
CI01180000_03983803_04002213.mRNA mRNA upstream 66995 3983486 ~ 4002655 (-) True CI01180000_03983803_04002213
CI01180000_04082957_04114030.mRNA mRNA upstream 166157 4082648 ~ 4114030 (-) True CI01180000_04082957_04114030
CI01180000_04131891_04133055.mRNA mRNA upstream 214467 4130958 ~ 4133136 (-) True CI01180000_04131891_04133055
CI01180000_04327538_04335433.mRNA mRNA upstream 410869 4327360 ~ 4336389 (-) True CI01180000_04327538_04335433
CI01180000_04554549_04560819.mRNA mRNA upstream 636950 4553441 ~ 4561772 (-) True CI01180000_04554549_04560819
TU801483 other downstream 663395 3244350 ~ 3244957 (-) True G680603
TU801485 other downstream 888677 3019498 ~ 3019675 (-) False G680604
TU804315 other upstream 879769 4796260 ~ 4797842 (-) True CI01180000_04796238_04797552
TU804622 other upstream 1701716 5618207 ~ 5619271 (-) True G683394
TU804519 other upstream 1834553 5751044 ~ 5755526 (-) False G683294
TU804922 other upstream 2845584 6762075 ~ 6762844 (-) True G683673
TU805291 other upstream 3486656 7403147 ~ 7413132 (-) False G684018

Expression Profile