RNA id: TCONS_00023493


Basic Information

Item Value
RNA id TCONS_00023493
length 7083
RNA type mRNA
GC content 0.43
exon number 26
gene id XLOC_011888
representative True

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 7229384 ~ 7351488 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTCTCTCCCGCACATCCGGGTGTCGCCTCCACAGCGCAGACTCGTGCGGTGATTGCAGCTCTGCGTTTCCGCGTTAGCAGCGGGGGGAACCAGCCGAGGGGAGGGAACGGAACACACCGAAGATTGGCCAAATCTAACCGGATTACTCTGCCCGTGTAGtgattaaaatgaaaaccaaGTGACACTCGACCCTCCGGTCCGTGTTTTAGGGAATGAGTGTGGGATTATGGCGCGAGACTGGATGACAACACTGTCTGACATGTGAGGACGAGCACAACAACAGTGTGTCCGTGTATGCACATCTCTGCGTTCGTTTCGCATTCGCTGGAAAACAACATGAAGAAGTTTAATATCAGGAAGGTGTTGGACGGATTGACCGCGgcgtcttcttcctcctcctctgccGCCGCCGCGTCCCCTCAGTCGGGGAATGACATGATTCAGGAGACCCTGCAGTCCGAGCATTTCCAGCTCTGCAAGACAGTGCGGCATGGCTTTCCCTATCAACCCTCCTCCATGGCTTTCGACCCTGTGCAGAAAATCCTGGCTATTGGCACACAGAGTGGAGCCCTGAGACTATTTGGCCGAGCAGGAGTTGAGTGTTACTGTCAGCATGAGAGCGGATCCGCTGTCATCCAGCTGGAGTTTCTTGTCAATGTAGGGGCGCTGGTTAGTGCTCTGGCAGATGACAGTATTCATTTGTGGAATTTGAGGCAAAAGCTTCCAGCCGTTCTCCATTCTCTTAAATTTAATCGGGAGAGGATCACGTTTTGCCATTTGCCTTTCCAGAGTAAATGGCTGTATGTGGGCACGGAAAGAGGGAACATTCATATCGTCAACGTGGAGTCCTTCACCCTCTCAGGCTATGTGATCATGTGGAACAAAGCCATTGAACTttcatCAAAGACTCACCCTGGACCAGTAGTTCACATCAGCGATAACCCCATGGATGAAGGAAAACTTTTAATTGGTTTTGAATGTGGGATAGTTGTGCTGTGGGACTTGAAATCGAAGAAGGCAGACTACCGCTACAACTATGATGAGGCGATCCACTCTGTGGCTTGGCATCACGAGGGGAAACAGTTTGTGTGCAGTCACTCGGATGGCACACTTACCACATGGAATGTGCGCGCTCCTGCCAAGCCTGCCCAGATCATTACACCGCATGGTAAACAGCCAAAGGATGGGAAGAAGCCGGAGCCTTGCAAACCCATCTTAAAAGTGGAGTACAAAACCACCAGAGCAGGGGACCCATTCATGATACTGTGTGGAGGTTTGTCATATGATACAGTGGGTAGGCGAGCCTGTCTGACTGTGATGCATGGGAAAAGCACTGCAGTGCTGGAGATGGACTACCCCATAGTGGATTTCCTTACGCTGTGTGAAACCCCATATCCAAACGATTTCCAGGAGCCTTATGCAGTTGTTGTCCTACTGGAGAAGGATTTGGTTGTTATTGACCTTGCACAAATTGGGTATCCCATCTTTGAGAACCCGTACCCTCTATCCATCCACGAGTCTCCGGTGACCTGCTGCGAATATTTTGCAGACTGTCCAGCCGAAGCAATCCCTGCACTTTACTCTGTTGGCTCCAGACAGAAAAGACAGGGCTTCAGTAAGAAGGAATGGCCCATAAGTGCAGGTAACTGGGGCCAGGGAACACTGAGTTTCTCAGAGATTATCATCACTGGGCATGCTGATGGATCGATCAAGTTTTGGGATGCCTCAGCTTtAATGCTTCAAGTGTTGTATAAGCTGAAAACAGCGAAGGTGTTTGACAAGCCCCGGAGTAAAGAGGAGAAATCCAGCACTGATATTGTGGATGAGGATCCATTCGCCATCCAGATGCTGTCCTGGTGTCCGGAGAGCCGTGTGCTGTGTGTGGCTGGAGTATCGGCTCATGTTATAGTCTACAGGTTCAGCAAACAGGAAGTCACCACCGAAGTGGTTCAGCTGTTGGAGGTGCGTATGCAGTGTGAGCTGAATGAAGTGGAATCTCCAGAGGGTGGAGGAGACCAGGCGTCGGCTGTTTCCACCCCAGGAACTGCACCCAGCCCTCAGACCAGCCTGCCTCAGTCTCACCCCTCCACAAGCAGCAACAACTCCTGCGACGGCCTTCGGGATAACGTGCCCTGCCTCAAGGTCAGGAGTTCCCCTCTCAAACAGTTTCCCGGTTATCATGTGGAGCTGCTCATTCAGCTGGTGTGGGTCAGCGGGGAGCCACCACAGCAGATCACCAGCCTGGCCATCAACTCTGCGTATGGCCTAGTCGCTTTTGGCAATGGAAACGGCCTTGCAGTTGTTGATTACATTCAGAAAACTCTCCTTCTGAACGTGACCACCGCCGAACTGTACGGCTCTACAGATCCTCACCACAGACAACCACGCTCACCCCGCAAAACCAGACAGCCCTCAGCAGGTCTTTGTGATGGTAATGATGCATCAGCTGCCCCAGAAGAAAGATGCAAATCACCAACCTCAGcTAAGATATCCCGGAAAATTAACATGCTTGCTGATCAGAAAGATGATGCCAGAGACAACTCATTCAGCCGCTCGCGCAGCTCCAGTGTGACCAGCATTGACAGAGAGTCACGGGAGGTCATTTCCTCCTTTTACTTTTGCGACTCTCTGTCCAAGAAGAGCGAGACGCTGGCAGTACCCAGTCTGTGGGTGGGCACCTCACTGGGCAGCATGTTGGCCATCGCCCTCACCGTTCCCTCCACACCAGAGCAGAGGATGCAACAGCCTGTGGGCGTTTCTTTCTGTGGTTCAGTTGTGCGCTTGAAGGGAGCTATTCTGCGTATGGCCCAGCTGGATGCCAGCGGGACTGTCCTTCCTCATATTTATGAGCCCTGGTATGAGCCCAAcgcccctgaagaggagagagagcgGCCACGGAGACGCAGACCCACGTCCCCTCCGTCATCTCAGGAGAACCAGGACTGTCAGTACGCCGTGGTCTGCTCTGAGAAACAGGCCAAGGTGGTGGCGCTGCCCTCCCAACACTGCATCTTTGAACACAACATCACTGAAGCATCCTTTGTGCTTAGAGCCGATGTGGTTACGATGACGGCCGGGGTTGCCATCGCCTGTTTCTGTGCCAACGGCCACATCATGACCCTCAGTTTGCCCAGCCTGCGGCCATTGCTGGATGTGAACTACCTTCCTCTGACGGACATGAGGATAGCCAGAACCTTCTGTTTCTCAAACCAAGGCCAAGCCCTGTACCTCACATCGCCCACTGAGATCCAAAGAATCACCTATAGCCAGGAAACCTGTGAAAACCTGCAGGAGATGCTTGGAGAGATGTTTACTCTAGTGGAGACACCAGAAGCTCCAAACAGAGGCTTCTTCAAGGGCTTGTTTGGAGGCGGCGCTCAGTCCTTGGACAGAGAGGATCTGTTTGGAGAGGTGGCTGCTGGGAAGGCCTCACGCAGCCTAGCCCAGCACATCCCGGGTCCTGGTGGTATGGAGGGAATGAAGGGGGCGGCGTCAGGTGTGGTGGGAGAGCTGGCGCGGGCGAGGATAGCGCTGGATGAGAGAGGACAGAAACTGGGAGAGCTGGAGGAGAGGACGGCAGCCATGATGGCCAGCGCAGACTCCTTCTCCAAACATGCGCATGATATGATGCTGAAATACAAGGACAAGAAATGGTACCAGCTCTGAGGGCCTGTAGGGAGTCAGCAGAAGACAGCAGATCCATCATCTCTCCTCGGTTTCTtccttctcttctcttctctttccCTCTCTGTGATGTCTTGAGACTCGGCACAACGTCCCGCGGCATTACCTCCAGCAGAGGAGACAGGAGGCGAAGGATCCAGACAAGCCAAACGCATCGGGACGGGATTACCAGGCACTAAAGTTTCCTCTTCTGAAAACAAAAAGCCGCGGTTCTTGTCTTGTAGAGGTGGCTTTTCACCGGTGCTGCCCCGTTGTTTACCGTCATCCGCCCCACGCTGTCATTTTCACTGCCATTCGATCTGCGAAGGAAACTACACAGAGAAAGACAACGAATGAAATAGAGACTAACGTGTGCAGCATTGCCAAGCTTAATGCTTCTGATAATCTGTCACTAGTGCAAGAAAACATTGCATGTCTAGTGATTTCATGTAGGAAATTAGTgcgttttattgttttgtttttttaggaaagggggcactgtaaaaagcgatttcTAGACTTGAAcagccattagttgactttactttaaaaagggagtaaacccgttgcttttaaagtgagTAGTTAACTTAACTTaaagaaagtgagtaaacccattgctttaaaagcgattagttgactgtgcttaaagtgagtaaacccattgcttttaaagcgattagttgactctacttaataaagtgagtaaacctattgctttaaaagcgattagttgactgtgcttaaagtaaacccattgcttttaaagcgattagttgactctacttaataaagtgagtaaaccctgtgctttaaaagcgattagttgactctacttaataaaatgagtaaaccctgtgctttaaaagcgattagttgactctacttaataaagtgagtaaaccctgtgctttaaaagcgattagctgactctacttaaagtgagtaaacccattgcttttaaagcgattagttgactcaaAAGTTGACTTAAAGTGAGtcaaaagcaatgggtttacttactttattaagtcaactaatcgctttaaaagtaatgggtttactcactctaagtagagtcaactaatcgctttaaaagcaatgagttaacaattttttttaaagtaaccccattgcttttaaagtgattagtttactaaattttaagtgagtaaacctattaCCTTAAAGGTATTAAGTTaactaattataaaaattaagttgacTCACACTAGGTTTATcgctttaaattaaaatctacTTGTCCCATTTAAATCAACGAgttaactcacttttttaaagtaaagcatgTCATCGCTTTTTACAGTGCGAGTCTTGTGAATATATTTCTGATGGATATTTCACCCTGGAATTAATATTTTGCATGAAGAGAATCTTGTTCTTTATGCAATATATTTGTTGTGAATGTAGGGTGAAATATAAGCAGTGTTTCACAAGACTCCTTCAGTAATCACGTTTGCTATGGAAAAGGCCAGAttgtcttttatatatatatatatatatatatatatatatatatatatatattaaaggggGATGAAGGATCATTTAATTTCACCTCTAAAGGGCTGGAAGTTGCTGTATTTACCACATATCATGGGATTATTTGGCCTGGCTTTGTTATGCATCATTTGGTTTATTGTTTCTTCTGAAGGACACATTGGTTTACACTGGATCAGGTCTCTAAAGAGCTATTAGGGAGGAGCTCAGACTTTGATGTACACTAGATGCTTTGTTGACACTGgtgaaggattttttttaaatgtacactcactctaaaaaaaacatgttttttttttttttccaggccaACTTGGGATAAATATGGACAATAACAAATGTTCtaaagaatatatttataaataatttaaaaagaaattaaccTAGATGTTGGTTTTgtctatgttttacacagaaattggcatttttttagagtgtaaggAGTGCAGGTGAATCTTTCATAACACATCTGGCCCATATTTCACTCAAGAAAAAACAAAGACACTTtagcttattttttaaatgtcatttctgAGGGTTTTTAGTGTAAAATTTAATAAGAAAATAGTTTAACATTGAGAGTGCAAATACTACCATAATGCTTAAATATTTATCAATTGTCCAAGAAAGTAGAAAAATTGGCTTTATTTTTTGCAAGTAACCTATAATTTACAATTTCTCAGATTTTAAgatgaaatatgaaatatttctGGCTCATATTTAACTCCAATGTCAAAagaataatatttattacaaagGAAATTAAGCTGTTTTGTGTAAAATTTAGCATAAATTTACATTAGTATAAATTTGAGACGGTACATACACTACCATGAACCAttaatatctatttatttatttatttttgcaaaataaagaacaaaaatctgcCTAATTGTCttgcaaatgtgcaaaaaacaTTTAACTTGAAAAAAAATTGGCTTAATATTTTTTGCAAGCAAGCTATCATTTTGAGTTTCTCAGATTTCAGGGTGAAATATGACTTAGATTTGATCAGGTTCGACCCAGGTGAACAACACTGAATACTGAATACACTGTAGAAATACCCATTATTTGACCTTTTCCGTATACGATTCACaggtatttttacatttatttacagaaatgaaTCGCATTATGGTATGTTGATccctgctctgttgacttttgatgttaaaaattcaactctacggtTTAACAAAGAggattttaatgacattttagtcgtttatataagtaataatatatatatatagagggaGAAATAAGTCTGAAAATAACAGAAACTAGAGGCAGTTTATCAGCAGGTTTTGTAGAGTAATTTACAACATcaatccagacaatatatcactgcaaactattaaaatcatcaataaaagtcactttttttgcatttatttacagtaatgaaTCGCATTATGGGTCATTGATCCCAGCTCTTTTGACTTTTAATGTTCAAAAAtcaaacaaagtgacttttattgacattttagtcatttatataagaaataatatatagagaaagagAATTAAGGTTTCTGTATCATattttacaacaccaacccagacaatatatcactgcaaactattaaaaacatcaataaaagtcactttttagtCAACTATTCTGGGTGAAATATGACTCAGATTTGATCAGGTGAACAACTACtgacaacactgtaaaaatacccATTCATTAACCTTTTCCGTATACGATTCACaggtatttttacatttatttacaacaatgagttgcattatgggacattgatCTCTGTTGActtctgatgttaaaaattcaactctacagtttaacaaagtgacttttattgacattttagtcatttatataagaaataataataataatatatatatatatatatatatatatatata

Function

GO:

id name namespace
GO:0050708 regulation of protein secretion biological_process
GO:0017157 regulation of exocytosis biological_process
GO:0005886 plasma membrane cellular_component
GO:0031201 SNARE complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005096 GTPase activator activity molecular_function
GO:0045159 myosin II binding molecular_function
GO:0019905 syntaxin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090821-5 Predicted to enable GTPase activator activity; myosin II binding activity; and syntaxin binding activity. Predicted to be involved in regulation of exocytosis and regulation of protein secretion. Predicted to act upstream of or within exocytosis. Predicted to be located in membrane. Predicted to be part of SNARE complex. Predicted to be active in cytoplasm and plasma membrane. Orthologous to human STXBP5 (syntaxin binding protein 5).

Ensembl:

ensembl_id ENSDART00000098731

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024820 lncRNA downstream 947744 6224873 ~ 6281640 (-) False XLOC_011871
TCONS_00024819 lncRNA downstream 948954 6224873 ~ 6280430 (-) False XLOC_011871
TCONS_00024821 lncRNA downstream 966302 6245407 ~ 6263082 (-) True XLOC_011871
TCONS_00024818 lncRNA downstream 1255973 5961811 ~ 5973411 (-) False XLOC_011866
TCONS_00024817 lncRNA downstream 1265274 5961811 ~ 5964110 (-) False XLOC_011866
TCONS_00024822 lncRNA upstream 113352 7464840 ~ 7466352 (-) True XLOC_011892
TCONS_00024526 lncRNA upstream 157570 7509058 ~ 7511552 (-) False XLOC_011895
TCONS_00024823 lncRNA upstream 157668 7509156 ~ 7512065 (-) False XLOC_011895
TCONS_00024824 lncRNA upstream 157668 7509156 ~ 7512071 (-) False XLOC_011895
TCONS_00024825 lncRNA upstream 157668 7509156 ~ 7534302 (-) False XLOC_011895
TCONS_00023492 mRNA downstream 10903 7124059 ~ 7218481 (-) True XLOC_011887
TCONS_00023491 mRNA downstream 168907 6985428 ~ 7060477 (-) True XLOC_011886
TCONS_00023490 mRNA downstream 200966 6985428 ~ 7028418 (-) False XLOC_011886
TCONS_00023489 mRNA downstream 200966 6985428 ~ 7028418 (-) False XLOC_011886
TCONS_00023488 mRNA downstream 245046 6969846 ~ 6984338 (-) True XLOC_011885
TCONS_00023494 mRNA upstream 13423 7364911 ~ 7371564 (-) True XLOC_011889
TCONS_00023495 mRNA upstream 29062 7380550 ~ 7436766 (-) False XLOC_011890
TCONS_00023496 mRNA upstream 84577 7436065 ~ 7440397 (-) True XLOC_011890
TCONS_00023497 mRNA upstream 88970 7440458 ~ 7476912 (-) False XLOC_011891
TCONS_00023498 mRNA upstream 91991 7443479 ~ 7457698 (-) False XLOC_011891
TCONS_00023487 other downstream 270654 6958610 ~ 6958730 (-) True XLOC_011884
TCONS_00023473 other downstream 628473 6591230 ~ 6600911 (-) False XLOC_011879
TCONS_00023451 other downstream 1215713 6013555 ~ 6013671 (-) True XLOC_011868
TCONS_00023450 other downstream 1262038 5967249 ~ 5967346 (-) True XLOC_011867
TCONS_00023449 other downstream 1266319 5962975 ~ 5963065 (-) True XLOC_011866
TCONS_00023504 other upstream 152621 7504109 ~ 7505978 (-) True XLOC_011894
TCONS_00023505 other upstream 292043 7643531 ~ 7672760 (-) False XLOC_011896
TCONS_00023511 other upstream 460887 7812375 ~ 7818925 (-) True XLOC_011899
TCONS_00023518 other upstream 878943 8230431 ~ 8237652 (-) True XLOC_011902
TCONS_00023520 other upstream 1015217 8366705 ~ 8366816 (-) True XLOC_011904

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000310_02317969_02352794.mRNA True 4036 mRNA 0.48 25 CI01000310 2317253 ~ 2352794 (-)