RNA id: TCONS_00023820


Basic Information

Item Value
RNA id TCONS_00023820
length 1914
RNA type nonsense_mediated_decay
GC content 0.47
exon number 11
gene id XLOC_012077
representative False

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 22002857 ~ 22010668 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATATCACCCTCATTGCTGCTTCTGATTCGTATCAGAGGAATTGATCACCCAAGATGAAGTTTGAGAACCTGTTGGCTGAGGTTGGAGGATTTGGAAAATACCAGTTCTGCCTCATGGCTCTTCTGGTGATTCCAAGGGTAACGCTGCCATGTCACTTCCTGCTGAACAACTTTATCGCCGCCATCCCATCTCATCACTGCGACATTAGCTCTCTGAGTGCTGATGGCATCTTTGGGAATCTGACTCAGGAGGAGAGACTGACTGTGGGTGTTCCAGCACAGGAAGACGGGACTCCTGCTTCCTGTCACATGTTTTCTCATCCTCAGTTTCAGCTGCTGATAAACTCCTCCAGCAGCTCAGATCTTCCAGTAGTGGAGTGTCAGAATGGATGGCGCTTTGATaacagcacctttaaatcaaCCTTGGCTACTGAGTTTGATTTGGTGTGCGACAGAAGAGGTCTGAATAAAGCCACAGCGACCATTTTCTTTGCTGGGGTGATGATTGGAGCGGCCATCTTTGGGTGGTTGACTGACAGGTTTGGTAGGAAACGAATGCTGATGTTGGCTTACCTGATATCCATTACATTTGGGGTGGCCAGTGCCTTCGCTCAGTCCTTCATCGTGTTTGCTATTATGAGGTTCTTCACTGGAATGGGCCTTACAGGCATCAGCATCATCTCCATTGTCCTGTTCATGAGGCGGGTCTCTCCACACccacaccagtgtgcagcatccatttggatgatgtgacggtagccacaggacaacggcgccagtgcgctcaccacacaccagctatgggtgaaataaagagaaagtgaTAGAGCCCATTCGGTGGATGGGGAGATTGTGAGGCTATGAaggGCATAGAATGGGCGGATATTGCACATAGGACGATTGCTGGTGTTATGATCAGTTTGGATTGGTCTCTCAGCTGTATGATATTATCAGGCGTTGCTTATCTTGTGAATGACTGGAGGGCTCTGATCCTCACAGTAACTGCTCCAATCGCACTGGCTATGATCACATGGAGGTGGCTCCCAGAGTCAGCACGATGGCTAATAGCCAATGGAAAACTGGAAGAGGCTCATTTTTATCTGAGCAAATGTGCCTCGGTCAATAATAGACAACACAACCTCAGAGATATCAAACCAGAGACCCTCGCTAATGTTATAATAGCTGACAGAGGTGACAGGACATATTCGTATCTGGATCTTGTGAGGTCTTCAAAGATGCGGAAACTGGCTATGCTTACAGGAATCACCTGGTTTGGAGTGGCGTTTACTTACTACGGCATCAGTTTTAACATCAGCGGCTTTGGGCTGAACCTCTACCTGACTCAGTTTATTTACGGTGCCATAGAGCTGCCATCAAAACTGGTTGCATATGTGTGCCTTGATAAACTGGGCCGGAGATACAGTCAGGTGGGAACGATGATTACAACAGGGGTCTGCATTGGCATCACTGTCCTCATTCCCAGAGTTTTGTGGGTGCCTTGTACCGTCATCGCTGTACTGGGTAAAGGATTCTCAGAGGCCTCTTTCACATGTGTTTTTCTCTATACCACTGAACTCTACCCGACTGTGTTACGGCAGAATGGATTAGGCTACAGCTCGTTCATTGGTCGTGTGGGTGTGTCTCTCGCTCCTCTCGTGAGTCTCCTGGATGAGGTCTGGCTTCCTCTGCCACAGGTCTTGTTTTGCTCTGTTGCCATTGTTGCAGGCCTCCTTGCACTTTTGCTTCCTGAGACCCACAATGTGCGGCTTCCTGAGACTATTGAGGACATTGAGAAAACTAGgAAAAGATCAGTGTGTTCACAACTGGAATATCAGCCTGGATTGGAAACCTTCAAGGAGACTAAATGAATTTGactcgaaaagaaaatgaatctaataaaagattttattcatta

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0022857 transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1311 Predicted to enable transmembrane transporter activity. Predicted to act upstream of or within transmembrane transport. Located in plasma membrane. Is expressed in several structures, including eye; heart; liver; pleuroperitoneal region; and skeletal muscle. Orthologous to human SLC22A7 (solute carrier family 22 member 7).

Ensembl:

ensembl_id ENSDART00000132520

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024539 lncRNA downstream 138675 21863655 ~ 21864182 (-) True XLOC_012073
TCONS_00023813 lncRNA downstream 160727 21839629 ~ 21842130 (-) True XLOC_012072
TCONS_00023812 lncRNA downstream 167405 21833734 ~ 21835452 (-) False XLOC_012072
TCONS_00024893 lncRNA downstream 560578 21432693 ~ 21442279 (-) True XLOC_012067
TCONS_00024892 lncRNA downstream 782378 21213422 ~ 21220479 (-) True XLOC_012063
TCONS_00023827 lncRNA upstream 102096 22112764 ~ 22137123 (-) True XLOC_012080
TCONS_00024894 lncRNA upstream 474137 22484805 ~ 22504384 (-) True XLOC_012082
TCONS_00023829 lncRNA upstream 510968 22521636 ~ 22525745 (-) False XLOC_012083
TCONS_00023830 lncRNA upstream 513578 22524246 ~ 22525745 (-) True XLOC_012083
TCONS_00023834 lncRNA upstream 560032 22570700 ~ 22571983 (-) False XLOC_012085
TCONS_00023819 mRNA downstream 922 21999011 ~ 22001935 (-) False XLOC_012076
TCONS_00023818 mRNA downstream 922 21999011 ~ 22001935 (-) True XLOC_012076
TCONS_00023817 mRNA downstream 1554 21994043 ~ 22001303 (-) False XLOC_012076
TCONS_00023815 mRNA downstream 9150 21982617 ~ 21993707 (-) False XLOC_012075
TCONS_00023816 mRNA downstream 9237 21983952 ~ 21993620 (-) True XLOC_012075
TCONS_00023822 mRNA upstream 3677 22014345 ~ 22021213 (-) True XLOC_012078
TCONS_00023823 mRNA upstream 21628 22032296 ~ 22067451 (-) False XLOC_012079
TCONS_00023824 mRNA upstream 33541 22044209 ~ 22048233 (-) False XLOC_012079
TCONS_00023825 mRNA upstream 33633 22044301 ~ 22062364 (-) True XLOC_012079
TCONS_00023826 mRNA upstream 97034 22107702 ~ 22137199 (-) False XLOC_012080
TCONS_00023811 other downstream 143693 21833724 ~ 21859164 (-) False XLOC_012072
TCONS_00023801 other downstream 722672 21279873 ~ 21280185 (-) True XLOC_012064
TCONS_00023793 other downstream 872480 21130261 ~ 21130377 (-) True XLOC_012061
TCONS_00023786 other downstream 1023905 20966835 ~ 20978952 (-) True XLOC_012057
TCONS_00023778 other downstream 1299560 20703179 ~ 20703297 (-) True XLOC_012054
TCONS_00023839 other upstream 775506 22786174 ~ 22786291 (-) True XLOC_012087
TCONS_00023840 other upstream 914541 22925209 ~ 22925337 (-) True XLOC_012088
TCONS_00023856 other upstream 1652543 23663211 ~ 23666478 (-) True XLOC_012099
TCONS_00023885 other upstream 2853043 24863711 ~ 24866653 (-) True XLOC_012119
TCONS_00023894 other upstream 2906682 24917350 ~ 24937879 (-) False XLOC_012122

Expression Profile

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