RNA id: TCONS_00023836


Basic Information

Item Value
RNA id TCONS_00023836
length 811
RNA type mRNA
GC content 0.41
exon number 3
gene id XLOC_012085
representative True

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 22563836 ~ 22573402 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACCACTGTAACTTTACTTGGTGGTAGAAGCGCGAGCAAAAGCTCTCGGTAAGtgtttaatacaaatataaaaaaagatagtTTAAAATATACATGATAAAGGTGTGTGCAACAACGATACAGTTCTTCCTTGTGACGTTCGGAGTTTCGGGAGGAGTtcgttgtgttttgttttggagGGATTTGGCGGTTAAAATATTACAGACACACAAGTAAACTAAATAACGTTAGCCTAAATGTATTAGAACTCTTTGTATATGGATGTTCGTTATTTTACGTACGTCTTCACGTTTGGACGGTTATTCCGTTGATTTTGGTGAcgtattttatgttcaacagtgAACGTCGTTATGTGTACAGTATGCTTTTAATATGCAACGTTACATGTGTTTAAATGATAAGGgacttttattttcatatttcaggGTGACAGGCTGAACTCTTTTAAACCATCTTCCTCAGACATCTGTCCTTCCAGACAGACAACATGGGTATTCAGGGCCTCTTGCAGTTTATCAAAGATGCTTCGGAGCCCATGCATGTGAAGAAGTATCGAGGACAGACAGTGGCTGTGGACACATACTGCTGGCTTCATAAAGGAGCTTTTTCATGTGCAGAGAAGCTTGCAAAAGGGGAACCTACAGATCAGTATGTCTCCTACTGTATGAAGTTTGTGGACATGCTGCTTTCTTTTGGTGTTAAACCTATCTTGGTGTTTGATGGTCGTAACTTGCCCTCCAAACAGGAAGTGGAGAAGTCCCGGCGAGAGAGGCGACAGGCCAATCTGCAGAAAGGCAAACAGCTGCTGCGGG

Function

GO:

id name namespace
GO:0006298 mismatch repair biological_process
GO:0006310 DNA recombination biological_process
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0006281 DNA repair biological_process
GO:0005634 nucleus cellular_component
GO:0004518 nuclease activity molecular_function
GO:0004519 endonuclease activity molecular_function
GO:0045145 single-stranded DNA 5'-3' exodeoxyribonuclease activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0004527 exonuclease activity molecular_function
GO:0035312 5'-3' exodeoxyribonuclease activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0016788 hydrolase activity, acting on ester bonds molecular_function
GO:0048256 flap endonuclease activity molecular_function
GO:0017108 5'-flap endonuclease activity molecular_function
GO:0003677 DNA binding molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
ko03430 Mismatch repair
ko03032 DNA replication proteins
ko03400 DNA repair and recombination proteins

ZFIN:

id description
ZDB-GENE-040426-2828 Predicted to enable 5'-flap endonuclease activity and single-stranded DNA 5'-3' exodeoxyribonuclease activity. Predicted to be involved in DNA recombination and mismatch repair. Predicted to act upstream of or within DNA repair. Predicted to be active in nucleus. Is expressed in proliferative region. Orthologous to human EXO1 (exonuclease 1).

Ensembl:

ensembl_id ENSDART00000141523

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00023834 lncRNA downstream 317 22570700 ~ 22571983 (-) False XLOC_012085
TCONS_00023829 lncRNA downstream 46555 22521636 ~ 22525745 (-) False XLOC_012083
TCONS_00023830 lncRNA downstream 46555 22524246 ~ 22525745 (-) True XLOC_012083
TCONS_00024894 lncRNA downstream 67916 22484805 ~ 22504384 (-) True XLOC_012082
TCONS_00023827 lncRNA downstream 435177 22112764 ~ 22137123 (-) True XLOC_012080
TCONS_00023838 lncRNA upstream 113859 22687170 ~ 22689632 (-) False XLOC_012086
TCONS_00024895 lncRNA upstream 113859 22687170 ~ 22689787 (-) False XLOC_012086
TCONS_00023837 lncRNA upstream 113859 22687170 ~ 22689787 (-) True XLOC_012086
TCONS_00024896 lncRNA upstream 909748 23483059 ~ 23485336 (-) True XLOC_012093
TCONS_00023851 lncRNA upstream 1054265 23627576 ~ 23631411 (-) True XLOC_012098
TCONS_00023831 mRNA downstream 19622 22544648 ~ 22552678 (-) True XLOC_012084
TCONS_00023828 mRNA downstream 247573 22319080 ~ 22324727 (-) True XLOC_012081
TCONS_00023826 mRNA downstream 435101 22107702 ~ 22137199 (-) False XLOC_012080
TCONS_00023825 mRNA downstream 509936 22044301 ~ 22062364 (-) True XLOC_012079
TCONS_00023824 mRNA downstream 524067 22044209 ~ 22048233 (-) False XLOC_012079
TCONS_00023841 mRNA upstream 639416 23212727 ~ 23221504 (-) True XLOC_012089
TCONS_00023842 mRNA upstream 663928 23237239 ~ 23241393 (-) True XLOC_012090
TCONS_00023843 mRNA upstream 837891 23411202 ~ 23416897 (-) False XLOC_012091
TCONS_00023844 mRNA upstream 837961 23411272 ~ 23412705 (-) True XLOC_012091
TCONS_00023845 mRNA upstream 860900 23434211 ~ 23446760 (-) True XLOC_012092
TCONS_00023820 other downstream 561632 22002857 ~ 22010668 (-) False XLOC_012077
TCONS_00023811 other downstream 713136 21833724 ~ 21859164 (-) False XLOC_012072
TCONS_00023801 other downstream 1292115 21279873 ~ 21280185 (-) True XLOC_012064
TCONS_00023793 other downstream 1441923 21130261 ~ 21130377 (-) True XLOC_012061
TCONS_00023786 other downstream 1593348 20966835 ~ 20978952 (-) True XLOC_012057
TCONS_00023839 other upstream 212863 22786174 ~ 22786291 (-) True XLOC_012087
TCONS_00023840 other upstream 351898 22925209 ~ 22925337 (-) True XLOC_012088
TCONS_00023856 other upstream 1089900 23663211 ~ 23666478 (-) True XLOC_012099
TCONS_00023885 other upstream 2290400 24863711 ~ 24866653 (-) True XLOC_012119
TCONS_00023894 other upstream 2344039 24917350 ~ 24937879 (-) False XLOC_012122

Expression Profile

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