RNA id: TCONS_00001918


Basic Information

Item Value
RNA id TCONS_00001918
length 324
RNA type mRNA
GC content 0.40
exon number 3
gene id XLOC_001195
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 21495850 ~ 21538673 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTTGACAGTATGTCTATTTGTGGTCATTTTATCCTCGTACAGTTTTAATCAGCGAGCTACAttgattttattctttttttgttctcTAAAGCGTGTTTTCACGCTGTCAGAAAAGTCCTGGTCTGGATCATGTTTGCAATACAAGTGGCAAAAAACAGTGGGAAACTATCTTGCTGTTGCAGGCAATTGTGTATCTCTTGACTGGGATAAAGATGGCGATATTTTGGCGGTGATTGCTGAGAAGTCCAGTTCTGTTTACTTGTGGGATGCGAATGTCAACAAAACCTCACAGCTGGACAGTGGTATGAGGTTAACATATTAA

Function

GO:

id name namespace
GO:0060271 cilium assembly biological_process
GO:0035721 intraciliary retrograde transport biological_process
GO:0030991 intraciliary transport particle A cellular_component
GO:0005929 cilium cellular_component

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-090313-277 Acts upstream of or within cilium assembly. Predicted to be part of intraciliary transport particle A. Predicted to be active in cilium. Human ortholog(s) of this gene implicated in several diseases, including Caroli disease; Senior-Loken syndrome; asphyxiating thoracic dystrophy 5; cranioectodermal dysplasia 4; and nephronophthisis 13. Orthologous to human WDR19 (WD repeat domain 19).

Ensembl:

ensembl_id ENSDART00000183873

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00001908 lncRNA downstream 215831 21320823 ~ 21321435 (-) True XLOC_001192
TCONS_00001904 lncRNA downstream 375855 21160650 ~ 21161411 (-) True XLOC_001190
TCONS_00001898 lncRNA downstream 521336 21010689 ~ 21015930 (-) False XLOC_001189
TCONS_00001895 lncRNA downstream 531333 21000784 ~ 21005933 (-) False XLOC_001188
TCONS_00001892 lncRNA downstream 541240 20990877 ~ 20996026 (-) False XLOC_001187
TCONS_00001920 lncRNA upstream 18215 21556544 ~ 21558413 (-) True XLOC_001196
TCONS_00003410 lncRNA upstream 183505 21721834 ~ 21723360 (-) True XLOC_001200
TCONS_00001926 lncRNA upstream 341926 21880255 ~ 21881768 (-) True XLOC_001201
TCONS_00003411 lncRNA upstream 461452 21999781 ~ 22001050 (-) True XLOC_001204
TCONS_00001938 lncRNA upstream 1113250 22651579 ~ 22652026 (-) True XLOC_001210
TCONS_00001914 mRNA downstream 7625 21516038 ~ 21529641 (-) False XLOC_001195
TCONS_00001911 mRNA downstream 53434 21423010 ~ 21483832 (-) True XLOC_001194
TCONS_00001909 mRNA downstream 127389 21333068 ~ 21409877 (-) False XLOC_001193
TCONS_00001910 mRNA downstream 192788 21333126 ~ 21344478 (-) True XLOC_001193
TCONS_00001907 mRNA downstream 215784 21313165 ~ 21321482 (-) False XLOC_001192
TCONS_00001919 mRNA upstream 2124 21540453 ~ 21563040 (-) False XLOC_001196
TCONS_00001921 mRNA upstream 38345 21576674 ~ 21599219 (-) True XLOC_001197
TCONS_00001922 mRNA upstream 72142 21610471 ~ 21714025 (-) True XLOC_001198
TCONS_00001924 mRNA upstream 183322 21721651 ~ 21723329 (-) False XLOC_001200
TCONS_00001925 mRNA upstream 323058 21861387 ~ 21881818 (-) False XLOC_001201
TCONS_00001916 other downstream 9895 21526672 ~ 21527371 (-) False XLOC_001195
TCONS_00001899 other downstream 524052 21011062 ~ 21013214 (-) True XLOC_001189
TCONS_00001897 other downstream 524424 21010689 ~ 21012842 (-) False XLOC_001189
TCONS_00001896 other downstream 533957 21001157 ~ 21003309 (-) True XLOC_001188
TCONS_00001894 other downstream 534329 21000784 ~ 21002937 (-) False XLOC_001188
TCONS_00001923 other upstream 142035 21680364 ~ 21680478 (-) True XLOC_001199
TCONS_00001929 other upstream 653623 22191952 ~ 22192067 (-) True XLOC_001205
TCONS_00001939 other upstream 1125394 22663723 ~ 22674613 (-) True XLOC_001211
TCONS_00001973 other upstream 1784673 23323002 ~ 23330066 (-) False XLOC_001223
TCONS_00001976 other upstream 1801635 23339964 ~ 23340503 (-) False XLOC_001223

Expression Profile

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