RNA id: TCONS_00025277


Basic Information

Item Value
RNA id TCONS_00025277
length 3610
RNA type mRNA
GC content 0.48
exon number 12
gene id XLOC_012636
representative False

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 10784730 ~ 10921940 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTAGGAACCTGCAGATCCAGCAAGCCATTCATCCAGTAGACCCTCTGGACATCCAGATGGAGAGCCATCAGGCTGAGGGGGTGTTGGAGATGCCCTCGGTGTCACCCTTAGGCTCACAGCCCTCGCTCAACACCCAGCTCACACAGCCCACCTCCTCCACAGacttctGCTTATCTTCATTTTCTCCTGTGATCCCAGAGCCCTGTGAAGAGGACGATGACCCTGAAGCTGAAGCAGGCAGTCCTGACTTTGAGCCAGGCACTGAAATAGATCAAGAGGACATTCCCTCAGATGCAGAGGCTGAAGCTCGTTCACGGTGCATAGATGAAGTGGTGACACTTCCAGTGGATAATGATAAAACAGAAAGCCAGGGACAGGTTTTCAACACTGCAGAGAAAACGTCTGCAAATCCAAGGGAGTTGATTGTGGACGTTGTGCTGTCTCCAATCCAAAAACCTGCTTTACCCATTGAGGAGGTGCATGAAGTTTCTCCTGTAGTACTAGTTAAATCTCCTGGTGCACGTTTCTTCCCTGAGCCCTATCTGCCTGATAAAGTCAAGCAGAACATTCCCCCGCCTCAGAGTCCTGATGTTAAAACCCCTCATTCTCCTGTAGCTCAAATCATTGCGCTGTCGCCCATCTGTTCCCAGCCTGTTCCACAACCAGGCACAGCATCTCCCAAATCTCCAGTCCAACCACAGCCTTGTGCCTGTTCTCCAACAGGCAATCCTTTGTCTCCGATTTGTACCCAATCGCAACCCTGCAATGAGCCACCTTCACCCCTATCCACAAGCTCCCCCGTCAGGACTCAACCAGTCCCAGCAGTAACTTCTACTCCTTTAGCTAAACCTGCTTCCGAGAATAGGACTAATGAACATTTGAAAGATTCAACTCCTGAGCTTAAGAAAACAGACCTCATTGAGGAGTTCTGGTTGAAGAGTGCAGAGATTAGAAAAAGTTTAGGGCTCACTCCCCTGGAACGAAGCAAAACTGCGGTGGAGAAGAGCATTGTGAAAACTCCAACACCCGAATCATCATCTCCTAAGTCTTATACCCCAGAGGACTTGTCTGAGGAACAGAAGCCTACATTTACGGGCCGTTCTATCATACGCAGGATCAATATTACCTTGGAGGGTCAGGTTATATCTCCGGTGGAACCTAAAAGTAATGGTTCAGAAAAGAAGGACTTAAGCAGCAGTTCAGGGTTGGGTCTAAACGGAAGTGTGACCACCAGTCAGACAGCTGCTAGCGACAGCTACAACAACTCTGATTCTACAATGCTTACCCCTCCTTCCAGTCCACCACCTCCTCCACCCAGGGAGGAACCTGCTTGTCTCCAAAACAAGAAGTCTCAGGTTTCCTGGGACAACCTCCTTGAAGGCACAGAAGAACCCAAATCTGAGACCATGCCCATTAAGCCCAGGACTCCAGTTAGTCCCCCTCAACCAAAACAAAAACCAGTTACAGCTCCAGTGCCAACCCCTAGAACCAATCCACCTGTTGTGATGAGGGTTAAGGAGCCCAATAAACCACGTCGAGAAGAAGTGAGAAAGTCTTTTGTTGAGTGTGTAGACGAGATACCATTTGCTGATGATGTTGAAGACACATACGATGACCGCACTCCAGATGCAAGTGGTCTTGAAAAGTTTTACACACCGCCGACTAGCAAGGTCAACCGGGATAAGCCGCCTCTCCACTTGGCACTGGCTATGGAAAATGGCAAGCCCAATATCCCTGGAGTTTCCCGAACAGCAAAGGGTTCCCAGCATTTTTCTCCTGAAGCCAAGGAGATCGCAGAGGAGCGAATGAGGGCACGGGAAAAGTCTGTGAAGAGCCAAGCTCTTAAAGATGCAATGGCCAAGCAGCTTACAAAGATGAAAGATTCTGAGGTTGCCAAGGGGGCTGTAGCAAAAGTAGCCTGGGATATTCCTGAAACAAAAGGAAAAAGCAAAAAGCAATCTAAAGCCCAGAAGGACTCTGCAGTGAAGGCCTTGGAGTCCAAAAAGCAAGCAGACACACTTCCAGACCGTTTCTTCTCTACACCATCTAGTAAGGCCTTAGACAGCTCTGTCACATCTTCAGAGAGCTCCACAGGGGGCAAAAGCAAGAAACGCAGCTCACTGTTTTCTCcacgcaaaaacaaaaaagaaaagaaagccaaaaatgaaagactgtccagcactGAAGAAACGCCGCCCAAGCACAAGTCCCTTTGGAAAGCAGTGTTCTCCGGCTACAAGAAGGACAAAAAGAAGAAAGATGACAAGTCATGCCCAAGTACACCCTCAAGCTCTACAACTGGAGACTCGGGGAAGAAGAAAGATTCACCCCTGGACAGGTCCTCAGATTTACGTCTGAGGAGAAATCTAAGCTTTTCTGAGGACTCTGATCTCTCCTGTGACGATGTTCTGGAAAGATCCTCTCAGAAGTCCAAGGGTGATtcTGTTTATGTACCTCATGCATTGGCGTTCAAGAGATCATATGCCACAAAGAAGACATACACGGAGGAGGAACTGAACGCCAAGCTGACAAGAAGAGTACAGAAAGCTGCACGGAGGCAGGCCAAGCAGGAGGAGCTCAAGAGACTTCACAGAGCTCAGATGATTCAGAGGCAGCTGGAGCAGGTGGAAGAGAAACAGAGGCAGTTAGAGGAGAGAGGCGTCGCGGTGGAAAAGGCACTGCGAGGCGAAGCAGGAATGGGTAAAAAGGACGATCCGAAGCTGATGCAGGAATGGTTTAAACTGGTCCAGGAGAAGAATGCCTTGGTACGATATGAATCCGAGCTGATGATATTTGCTCGGGAGCTAGAGTTGGAGGACAGACAGAGTCGACTGCAACAGGAACTACGGGAACGCATGGCAATAGATGATCATCTGAAGACAGAGGAGGAGCTGGCAGAGGAGAAGCAGATTCTGAATGAGATGTTGGAGGTGGTGGAGCAGCGAGACTCTCTGGTGGCCCTGCTGGAGGAACAGAGACTCAGGGAGAAGGAAGAAGATAAAGACCTGGAGGCGGTGATGCTCTCCAAAGGATTCAACCTCAACTGGGCTTAACATAACAATGTCCAAAAACCATCTAACCCGCCAGCGCTTCACTACAGggagtacaaaaaaaaatctaaatctcagAAAGAGTCGCTCTTGGTTTTATTGGGCATGTCAACAACGTTTACAAACCTATTCATGAGCTCGATGGTGATGTTTTTATGAGGTTTCCTGGCACGACTCAGGGCGTTTTGTCCAATCGGCAGCCAAGGCAAGGCGTTCTCCATTTCGGAAATAAGGAGAacataaatttttatttagtaatttctGGGACATATCAATCAATCCTGCTGATGTTGAGGAAGTCTGAGACTAAATGACTCTACATATAAAGCCAGTCTTGTTTATCAGAGAATGTCTGGTCAATCAACTGTTACGTTTTCAGTGACGAGCCGCTTTTTTTGGACTTCATTTCCTTTTAATGCGTTTTCTACATTCACTACTGACTGGAAAACAAAAGTACAAGTGTTTTCTCTTCGATCGCACTTCTATCCTGTGTAATATAACACACTATATAGGCATCAGACCTCCACGTGATGGACTTTCTCTCGGCGATTGACGCGCGT

Function

GO:

id name namespace
GO:0006887 exocytosis biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0030042 actin filament depolymerization biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen molecular_function
GO:0004497 monooxygenase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0071949 FAD binding molecular_function
GO:0003779 actin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050126-2 Predicted to enable FAD binding activity; actin binding activity; and oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen. Predicted to be involved in actin filament depolymerization. Predicted to act upstream of or within exocytosis. Predicted to be located in nucleus. Is expressed in several structures, including cardiovascular system; pectoral fin; pectoral fin bud; proctodeum; and retina. Orthologous to human MICAL3 (microtubule associated monooxygenase, calponin and LIM domain containing 3).

Ensembl:

ensembl_id ENSDART00000147613

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027061 lncRNA upstream 142942 10716851 ~ 10742054 (+) False XLOC_012635
TCONS_00026872 lncRNA upstream 167461 10713532 ~ 10717535 (+) False XLOC_012635
TCONS_00026871 lncRNA upstream 234683 10649872 ~ 10650313 (+) True XLOC_012632
TCONS_00027060 lncRNA upstream 248672 10632783 ~ 10636324 (+) True XLOC_012631
TCONS_00025270 lncRNA upstream 697444 10106306 ~ 10187552 (+) True XLOC_012630
TCONS_00026873 lncRNA downstream 342395 11264335 ~ 11269349 (+) True XLOC_012638
TCONS_00027062 lncRNA downstream 739637 11661577 ~ 11694268 (+) True XLOC_012641
TCONS_00027063 lncRNA downstream 1108468 12030408 ~ 12033392 (+) False XLOC_012645
TCONS_00027064 lncRNA downstream 1108723 12030663 ~ 12033392 (+) False XLOC_012645
TCONS_00026874 lncRNA downstream 1110512 12032452 ~ 12033482 (+) True XLOC_012645
TCONS_00025274 mRNA upstream 5370 10784730 ~ 10879626 (+) False XLOC_012636
TCONS_00025276 mRNA upstream 37547 10840071 ~ 10847449 (+) False XLOC_012636
TCONS_00025272 mRNA upstream 194631 10689772 ~ 10690365 (+) True XLOC_012634
TCONS_00025266 mRNA upstream 822366 9996813 ~ 10062630 (+) True XLOC_012627
TCONS_00025262 mRNA upstream 936392 9749375 ~ 9948604 (+) False XLOC_012624
TCONS_00025279 mRNA downstream 4257 10926197 ~ 10931578 (+) False XLOC_012637
TCONS_00025280 mRNA downstream 7721 10929661 ~ 10959429 (+) False XLOC_012637
TCONS_00025281 mRNA downstream 7749 10929689 ~ 10959429 (+) True XLOC_012637
TCONS_00025283 mRNA downstream 584621 11506561 ~ 11549906 (+) True XLOC_012640
TCONS_00025285 mRNA downstream 936457 11858397 ~ 11909472 (+) True XLOC_012643
TCONS_00025273 other upstream 142833 10742049 ~ 10742163 (+) True XLOC_012635
TCONS_00025271 other upstream 214258 10670661 ~ 10670738 (+) True XLOC_012633
TCONS_00025267 other upstream 868370 10016508 ~ 10016626 (+) True XLOC_012628
TCONS_00025264 other upstream 1073844 9811020 ~ 9811152 (+) True XLOC_012625
TCONS_00025261 other upstream 1169228 9708575 ~ 9715768 (+) True XLOC_012623
TCONS_00025282 other downstream 535273 11457213 ~ 11457330 (+) True XLOC_012639
TCONS_00025284 other downstream 908965 11830905 ~ 11831020 (+) True XLOC_012642
TCONS_00025309 other downstream 3026870 13948810 ~ 13948924 (+) True XLOC_012664
TCONS_00025324 other downstream 3720931 14642871 ~ 14649295 (+) False XLOC_012672
TCONS_00025333 other downstream 4067139 14989079 ~ 14996705 (+) True XLOC_012675

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000013_09309438_09335834.mRNA False 3390 mRNA 0.49 12 CI01000013 9309372 ~ 9336077 (-)