Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00025765 |
| length | 2355 |
| RNA type | mRNA |
| GC content | 0.48 |
| exon number | 14 |
| gene id | XLOC_012931 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007129.7 |
| NCBI id | CM002902.2 |
| chromosome length | 51023478 |
| location | 34362608 ~ 34536067 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0055085 | transmembrane transport | biological_process |
| GO:1901379 | regulation of potassium ion transmembrane transport | biological_process |
| GO:0055114 | oxidation-reduction process | biological_process |
| GO:0006813 | potassium ion transport | biological_process |
| GO:1902260 | negative regulation of delayed rectifier potassium channel activity | biological_process |
| GO:0031234 | extrinsic component of cytoplasmic side of plasma membrane | cellular_component |
| GO:0044224 | juxtaparanode region of axon | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0008076 | voltage-gated potassium channel complex | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0004033 | aldo-keto reductase (NADP) activity | molecular_function |
| GO:0005249 | voltage-gated potassium channel activity | molecular_function |
| GO:0044325 | ion channel binding | molecular_function |
| GO:0015459 | potassium channel regulator activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-050327-79 | Predicted to enable aldo-keto reductase (NADP) activity; potassium channel regulator activity; and transmembrane transporter binding activity. Predicted to be involved in negative regulation of delayed rectifier potassium channel activity. Predicted to act upstream of or within potassium ion transport; regulation of ion transmembrane transport; and transmembrane transport. Predicted to be located in cytoplasm and plasma membrane. Predicted to be integral component of membrane. Predicted to be part of voltage-gated potassium channel complex. Predicted to be active in juxtaparanode region of axon. Predicted to be extrinsic component of cytoplasmic side of plasma membrane. Is expressed in immature eye; myotome; nervous system; pharyngeal arch; and somite. Human ortholog(s) of this gene implicated in temporal lobe epilepsy. Orthologous to human KCNAB1 (potassium voltage-gated channel subfamily A regulatory beta subunit 1). |
| ensembl_id | ENSDART00000131478 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00026916 | lncRNA | upstream | 168234 | 34187082 ~ 34194374 (+) | False | XLOC_012929 |
| TCONS_00026917 | lncRNA | upstream | 168234 | 34189320 ~ 34194374 (+) | True | XLOC_012929 |
| TCONS_00027130 | lncRNA | upstream | 313941 | 34028272 ~ 34048667 (+) | True | XLOC_012928 |
| TCONS_00025753 | lncRNA | upstream | 615493 | 33735335 ~ 33747115 (+) | True | XLOC_012923 |
| TCONS_00026915 | lncRNA | upstream | 632716 | 33725576 ~ 33729892 (+) | False | XLOC_012922 |
| TCONS_00027131 | lncRNA | downstream | 407154 | 34942728 ~ 35038409 (+) | False | XLOC_012935 |
| TCONS_00027132 | lncRNA | downstream | 482758 | 35018332 ~ 35038409 (+) | False | XLOC_012935 |
| TCONS_00027133 | lncRNA | downstream | 498196 | 35033770 ~ 35038409 (+) | True | XLOC_012935 |
| TCONS_00027134 | lncRNA | downstream | 537402 | 35072976 ~ 35074637 (+) | True | XLOC_012936 |
| TCONS_00027135 | lncRNA | downstream | 539841 | 35075415 ~ 35075774 (+) | True | XLOC_012937 |
| TCONS_00025764 | mRNA | upstream | 120050 | 34225520 ~ 34242558 (+) | True | XLOC_012930 |
| TCONS_00025763 | mRNA | upstream | 145722 | 34181677 ~ 34216886 (+) | False | XLOC_012929 |
| TCONS_00025762 | mRNA | upstream | 166864 | 34181655 ~ 34195744 (+) | False | XLOC_012929 |
| TCONS_00025761 | mRNA | upstream | 444252 | 33914168 ~ 33918356 (+) | True | XLOC_012927 |
| TCONS_00025760 | mRNA | upstream | 540717 | 33818577 ~ 33821891 (+) | True | XLOC_012926 |
| TCONS_00025767 | mRNA | downstream | 63741 | 34599315 ~ 34642063 (+) | False | XLOC_012932 |
| TCONS_00025768 | mRNA | downstream | 63748 | 34599322 ~ 34601949 (+) | False | XLOC_012932 |
| TCONS_00025769 | mRNA | downstream | 65449 | 34601023 ~ 34642086 (+) | True | XLOC_012932 |
| TCONS_00025770 | mRNA | downstream | 131912 | 34667486 ~ 34836808 (+) | True | XLOC_012933 |
| TCONS_00025771 | mRNA | downstream | 325994 | 34861568 ~ 34935178 (+) | True | XLOC_012934 |
| TCONS_00025746 | other | upstream | 735758 | 33622917 ~ 33626850 (+) | False | XLOC_012918 |
| TCONS_00025732 | other | upstream | 918351 | 33443264 ~ 33444257 (+) | True | XLOC_012909 |
| TCONS_00025687 | other | upstream | 2273664 | 32084939 ~ 32088944 (+) | True | XLOC_012873 |
| TCONS_00025679 | other | upstream | 2516052 | 31845504 ~ 31846556 (+) | True | XLOC_012868 |
| TCONS_00025666 | other | upstream | 3356550 | 30998626 ~ 31006058 (+) | False | XLOC_012861 |
| TCONS_00025772 | other | downstream | 537402 | 35072976 ~ 35074623 (+) | False | XLOC_012936 |
| TCONS_00025779 | other | downstream | 638298 | 35173872 ~ 35176134 (+) | True | XLOC_012939 |
| TCONS_00025784 | other | downstream | 1271274 | 35806848 ~ 35806966 (+) | True | XLOC_012944 |
| TCONS_00025785 | other | downstream | 1283875 | 35819449 ~ 35819563 (+) | True | XLOC_012945 |
| TCONS_00025791 | other | downstream | 1605659 | 36141233 ~ 36142754 (+) | False | XLOC_012949 |
