RNA id: TCONS_00026808


Basic Information

Item Value
RNA id TCONS_00026808
length 1282
RNA type mRNA
GC content 0.47
exon number 2
gene id XLOC_013660
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 48515579 ~ 48517040 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GATAGAGAAGTGGAGTATGAAACAGTTATTACAGATCATTAATCAGTAATACACACTTGTTCATTTCCAATTTCCTGCTTTAGCTTGTCTTTATAAGAGTGGACGAAGGATCCAGGAGCAGAAGAACCAGCGGGCGACTCAAGATCTCCTCTCAGACTCTCCAGCGGACTCGAAGATGACTCGCTCCTTAAGAGAGTGGTTCAAAGATTACAGGTTAAAGCAACGCATTCGCAAAAACCGACTGGTCACCAAAGATGGCCGCTGCAACATTGAGTTTGACAATGTGATGCACAGAAACCGATTCGCCTATGTCCGCGACTTCTGGACCACCTTCGTGGAGACCCGATGGCGGTTCATCATCTTGTATTTTGTGGCATCCTTTACCCTCAGCTGGTTTATCTTCGGACTCATCTGGTACTGGTTAGCAAGAAGCAATGGTGACCTGTTGTGGCAGAATCCACCACCAGATCATAAACCATGCGTTTACAGCGTTTACGATATGACTTATGCCTTTATCTTCTCGCTGGAGACCCAAAACACAGTTATCTATGGCAATGTATATGTCACTGATCAATGTCCTGGAGGTGTGGCTCTGATTATAATCCAGACTATTATAGGAATCTTAATCGGTATATTCTGGTGTGGTATAGTTATAACCAAAATCACCCTTCCAAAAAAGAGAGCCAAAACCATCACCTTCAGCGAATCCGCTGTCATCTGCCCCAAAAAAGGCACTCTTTGCCTTCAAATCCGTGTCGCCAACCTGCGCAAGACCTTAATGATCGGCAGTCAGATTTACGGGAAGCTTCTGAGGACAACAGTCACGGGAGGTGAGACCGTCATCCTGGACCAGGTCAGCATTGACTTCATGGTGGACGCCGGTAAAGACAATCTGTTTTTCGTGTGTCCTTTAACCCTGTACCACATCATTGACAAAAGCAGCCCATTTTTCGACATGGCTGTGGACACGCTACATCAGCAGGACTTTGAGCTTGTGGTTTTCCTTGATGGCATGGCCGAAACCACCAGCTCCTCCTGCCAGGTCAGGACTTCATACATCCCTCAGGAGATCATGTGGGGCTATGACTTTCTCTCGATCATCTCCCGCAGCGAAGAGGGAAGATATCAAGTGGACTTTTCCAATTTTGCCAAAGTGGTGCCTGTTCCTACCGCACATTGCTCCCGCTGCTACCACAATGAGCCCGGAAACCATCTCGAGAGCACTGACAACAAGAGTTTTGAGGTGTTCGACATGGAGCTTCCCAACTGCAACAAAATGTAA

Function

GO:

id name namespace
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0006811 ion transport biological_process
GO:0006813 potassium ion transport biological_process
GO:1990573 potassium ion import across plasma membrane biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015272 ATP-activated inward rectifier potassium channel activity molecular_function
GO:0005242 inward rectifier potassium channel activity molecular_function
GO:0005244 voltage-gated ion channel activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050420-256 Predicted to enable ATP-activated inward rectifier potassium channel activity. Predicted to be involved in potassium ion import across plasma membrane and regulation of ion transmembrane transport. Predicted to act upstream of or within potassium ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Human ortholog(s) of this gene implicated in Bartter disease type 2. Orthologous to human KCNJ1 (potassium inwardly rectifying channel subfamily J member 1).

Ensembl:

ensembl_id ENSDART00000143645

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027437 lncRNA downstream 322493 48186556 ~ 48193086 (-) True XLOC_013655
TCONS_00027436 lncRNA downstream 607910 47906641 ~ 47907669 (-) True XLOC_013654
TCONS_00027435 lncRNA downstream 629493 47881952 ~ 47886086 (-) True XLOC_013653
TCONS_00027434 lncRNA downstream 637700 47874535 ~ 47877879 (-) True XLOC_013652
TCONS_00027433 lncRNA downstream 1156489 47337003 ~ 47359090 (-) True XLOC_013648
TCONS_00027438 lncRNA upstream 54867 48571907 ~ 48687591 (-) False XLOC_013662
TCONS_00027439 lncRNA upstream 54867 48571907 ~ 48687718 (-) True XLOC_013662
TCONS_00027440 lncRNA upstream 433969 48951009 ~ 48951722 (-) True XLOC_013665
TCONS_00026996 lncRNA upstream 601413 49118453 ~ 49121935 (-) True XLOC_013668
TCONS_00027441 lncRNA upstream 607788 49124828 ~ 49126037 (-) False XLOC_013669
TCONS_00026807 mRNA downstream 6994 48507075 ~ 48508585 (-) True XLOC_013659
TCONS_00026804 mRNA downstream 15034 48491029 ~ 48500545 (-) False XLOC_013657
TCONS_00026806 mRNA downstream 15034 48499029 ~ 48500545 (-) True XLOC_013657
TCONS_00026803 mRNA downstream 22628 48491007 ~ 48492951 (-) False XLOC_013657
TCONS_00026802 mRNA downstream 218786 48279202 ~ 48296793 (-) True XLOC_013656
TCONS_00026809 mRNA upstream 10745 48527785 ~ 48530221 (-) True XLOC_013658
TCONS_00026810 mRNA upstream 25860 48542900 ~ 48558420 (-) False XLOC_013661
TCONS_00026811 mRNA upstream 26067 48543107 ~ 48547564 (-) False XLOC_013661
TCONS_00026812 mRNA upstream 26067 48543107 ~ 48550426 (-) True XLOC_013661
TCONS_00026813 mRNA upstream 179054 48696094 ~ 48745517 (-) True XLOC_013663
TCONS_00026799 other downstream 1011685 47503777 ~ 47503894 (-) True XLOC_013649
TCONS_00026769 other downstream 2870277 45619558 ~ 45645302 (-) True XLOC_013622
TCONS_00026763 other downstream 3891984 44616001 ~ 44623595 (-) True XLOC_013614
TCONS_00026761 other downstream 3904327 44599806 ~ 44611252 (-) True XLOC_013613
TCONS_00026751 other downstream 4442151 44065033 ~ 44073428 (-) True XLOC_013607

Expression Profile

//