RNA id: TCONS_00026812


Basic Information

Item Value
RNA id TCONS_00026812
length 1634
RNA type mRNA
GC content 0.47
exon number 2
gene id XLOC_013661
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 48542900 ~ 48558420 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGGAAAGTAGGGAGAAAGAGTTAGTGAAGTGTGAAACAGTTAAGGAGGGATACGGCTTATTAATCAGTAACACACACTTGTTCATTTCCAATTTCCTGCTTTAGCTTGCTTTTATAAGAGCGGACGAAGGCTTCAGGAGCAGGAGAACCAGCGAGCGACTCAAGCTCTCCTCTCAGACTTCTCCAGCAGACTCTAAGATGACTCGCTCATTGAGAGAGTGGTTTAAAGAGTACATGTCAGAGCGGCGCGGGCGAAAAAACCGCCTGGTCACCAAAGATGGACGTTGCAACATCGAGTTCGGCAACGTGATGCACAGAAACCGCTTCGCCTACGTCCTCGACTTCTGGACCACCTTCGTGGAGACCCGATGGCGGTTCATCCTCTTGTATTTTGTGGCGTCCTTCACCCTCAGCTGGTTCATCTTCGGACTCATCTGGTACTGGTTGGCAAGAAACAATGGCGACCTGTTGTGGCAGAATCCACCACCAGGTCATAAACCATGCGCTTTTAGCGTTAATGATATGACTTATGCCTTCCTTTTCTCACTGGAGACCCAGTCCACCATTGGGTTTGGCAATATATACGTCACTGACCAATGTCCTGGAGGTGTGGCTTTGATTGTAATCCAGACTATCATAGGACTCTTCATCAACATCTTCTGGTGTGGTATAGTCATGACCAAAATATCCCTTCCAAAAAAGAGAGCCAAAACCATCACCTTCAGTGAATCTGCTGTCATCTGCCCCAAAAAAGGCACTCTTTGCCTTCAAATCCGTGTAGCCAACCTGCGCAAAACCTTAATGATCGGCAGTCAGATTTACGGGAAGCTTCTGAGGACAACAGTCACGGGAGGTGAGACCGTCATCCTGGACCAGGTCAGCATTGACTTCATGGTGGACGCCGGTAAAGACAATCTGTTTTTCGTGTGTCCTTTAACCCTGTACCACATCATTGACAAAAGCAGTCCGTTCTTCAACATGGCTGTGGACACGATGCATCAGCAGGACTTTGAGCTTGTGGTTTTCCTCGATGGCATGGCTGAATCCACCAGCTCTGCCTGCCAGGTCAGGACTTCATACATCCCTCAGGAGATCATGTGGGGCTATGACTTTCTCCCGATCATCTCCCGCAGCAAAGAGGGAAGGTACCGAGTGGACTTTTCCAACTTTGCTAAAGTGGTGCCTGTGCCAACCGCTCATTGCACCCACTGCTACCACAATGAGCCCGGAAACCATCTCCATCTCAAGGGCATTGACAACAAGGGCTTTGAGGTGATCGACATTGAGCCGCCAAACGGCACCAAAATGTAACGCTTTTTTGACTGACTGGTCAACATCTTGCACTAGGCCGAAACCATTGGACACTAATGCCTTATGTCTTTCATTGTGTGTATGAGAGGCGAGAGGAGTGTTTCAATATCTCGAAATACCACTTGAGTGGGAACACTGCAGGAGTCCATTTCTTTTATCAAATGCACTGCTTCACTCTTCgcaaaaacaaagtttttttttttgttgtctatTTCACCTGACAGAATTGAAAAGTGTGAATTGTGGAGTGAATTATGGTTCTGTTCTTCTGTTTCGTACTGTAGACATTGATTTCGGAGTTTGAGTATCCACTGGCAATTAATT

Function

GO:

id name namespace
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0006811 ion transport biological_process
GO:0006813 potassium ion transport biological_process
GO:1990573 potassium ion import across plasma membrane biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015272 ATP-activated inward rectifier potassium channel activity molecular_function
GO:0005242 inward rectifier potassium channel activity molecular_function
GO:0005244 voltage-gated ion channel activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-031118-55 Enables inward rectifier potassium channel activity. Predicted to be involved in potassium ion import across plasma membrane and regulation of ion transmembrane transport. Predicted to act upstream of or within potassium ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in gill; integument; and pronephric duct. Human ortholog(s) of this gene implicated in Bartter disease type 2. Orthologous to human KCNJ1 (potassium inwardly rectifying channel subfamily J member 1).

Ensembl:

ensembl_id ENSDART00000145189

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027437 lncRNA downstream 350021 48186556 ~ 48193086 (-) True XLOC_013655
TCONS_00027436 lncRNA downstream 635438 47906641 ~ 47907669 (-) True XLOC_013654
TCONS_00027435 lncRNA downstream 657021 47881952 ~ 47886086 (-) True XLOC_013653
TCONS_00027434 lncRNA downstream 665228 47874535 ~ 47877879 (-) True XLOC_013652
TCONS_00027433 lncRNA downstream 1184017 47337003 ~ 47359090 (-) True XLOC_013648
TCONS_00027438 lncRNA upstream 21481 48571907 ~ 48687591 (-) False XLOC_013662
TCONS_00027439 lncRNA upstream 21481 48571907 ~ 48687718 (-) True XLOC_013662
TCONS_00027440 lncRNA upstream 400583 48951009 ~ 48951722 (-) True XLOC_013665
TCONS_00026996 lncRNA upstream 568027 49118453 ~ 49121935 (-) True XLOC_013668
TCONS_00027441 lncRNA upstream 574402 49124828 ~ 49126037 (-) False XLOC_013669
TCONS_00026805 mRNA downstream 12886 48498366 ~ 48530221 (-) False XLOC_013658
TCONS_00026813 mRNA upstream 145668 48696094 ~ 48745517 (-) True XLOC_013663
TCONS_00026814 mRNA upstream 202736 48753162 ~ 48755037 (-) True XLOC_013664
TCONS_00026815 mRNA upstream 428697 48979123 ~ 48983690 (-) False XLOC_013666
TCONS_00026816 mRNA upstream 433080 48983506 ~ 48992363 (-) True XLOC_013666
TCONS_00026817 mRNA upstream 450999 49001425 ~ 49020066 (-) False XLOC_013667
TCONS_00026799 other downstream 1039213 47503777 ~ 47503894 (-) True XLOC_013649
TCONS_00026769 other downstream 2897805 45619558 ~ 45645302 (-) True XLOC_013622
TCONS_00026763 other downstream 3919512 44616001 ~ 44623595 (-) True XLOC_013614
TCONS_00026761 other downstream 3931855 44599806 ~ 44611252 (-) True XLOC_013613
TCONS_00026751 other downstream 4469679 44065033 ~ 44073428 (-) True XLOC_013607

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000028_00612606_00613724.mRNA True 4344 mRNA 0.41 1 CI01000028 610000 ~ 614343 (+)