RNA id: TU130021


Basic Information

Item Value
RNA id TU130021
length 410
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G113659
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 11130117 ~ 11130526 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTGTATATTGTGGCATATCTTAATGCATGGCCTATATGGGTATAGTAATGAGCCTATCAGCAGTATTCCCATGTCTGTCTTAAAGAGAAATATTCATATACAACATTCGTGTCTCTTCCACATTTTCATTAAAATCACATGGACTCATTGGTACAGCTCTCCCTGTTCCAGTGTCCTGTGTCCATTTTCATTAAAATCACATGGACTCATTGGTACAGCTCTCCCTGTTCCAGTGTCCTGTGTCCATTTTCATTAAAATCACATGGACTCATTGGTACAGCTCTCCCTGTTCCAGTGTCCTGTGTCCATTTTCATTAAAATCACATGGACTCATTGGTACAGCTCTCCCTGTTCCagtgtcctgtgtcctgtgtccATTTTCATTAAAATCATATGGACTCATTGGTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129338 lncRNA downstream 3796 11125749 ~ 11126321 (-) True G113182
TU129337 lncRNA downstream 4891 11124958 ~ 11125226 (-) True G113181
TU129331 lncRNA downstream 15193 11114621 ~ 11114924 (-) True G113175
TU129329 lncRNA downstream 17045 11112832 ~ 11113072 (-) True G113173
TU129328 lncRNA downstream 17949 11111859 ~ 11112168 (-) True G113172
TU130022 lncRNA upstream 1553 11132079 ~ 11132930 (-) True G113660
TU130023 lncRNA upstream 3125 11133651 ~ 11133962 (-) True G113661
TU130024 lncRNA upstream 6007 11136533 ~ 11137690 (-) True G113662
TU130031 lncRNA upstream 17424 11147950 ~ 11149850 (-) False G113666
TU130032 lncRNA upstream 18921 11149447 ~ 11149850 (-) True G113666
XR_005035048.1 mRNA downstream 70644 11058984 ~ 11059473 (-) False LOC118937688
XM_036937860.1 mRNA downstream 128995 10840566 ~ 11001122 (-) False LOC110511734
XM_021586929.2 mRNA upstream 34587 11165113 ~ 11168638 (-) True lratd2b
XM_036937950.1 mRNA upstream 117511 11248037 ~ 11261509 (-) False prelid3a
XM_036937954.1 mRNA upstream 117511 11248037 ~ 11261509 (-) False prelid3a
XM_036938010.1 mRNA upstream 267566 11398092 ~ 11402862 (-) True LOC110514530
XM_036938038.1 mRNA upstream 341413 11471939 ~ 12290703 (-) False LOC110513475
TU129220 other downstream 108383 11021041 ~ 11021734 (-) True G113096
TU129027 other downstream 321873 10736729 ~ 10808244 (-) True eif3h
TU129012 other downstream 411459 10648265 ~ 10718658 (-) True G112965
TU128973 other downstream 559309 10570442 ~ 10570808 (-) True G112928
TU128520 other downstream 783182 10346471 ~ 10346935 (-) True G112567
TU130068 other upstream 79947 11210473 ~ 11218154 (-) True G113688
TU130103 other upstream 180317 11310843 ~ 11312658 (-) True G113712
TU130124 other upstream 192515 11323041 ~ 11325612 (-) True G113720
TU130157 other upstream 218816 11349342 ~ 11352741 (-) False G113733
TU130159 other upstream 218816 11349342 ~ 11352741 (-) True G113733

Expression Profile