RNA id: TU130031


Basic Information

Item Value
RNA id TU130031
length 1281
lncRNA type inter_gene
GC content 0.39
exon number 4
gene id G113666
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 11147950 ~ 11149850 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGTCAATATAATACAGTCTGGAGGTCAATATAATACAGTCTGGAGGTCAATATAATACAGTCTGGAGGTCAATATAATACAGTCTGTTGGAGGTCAATATAATACAGTCTGTTGGAGGTCAATATAATACAGTCTGGAGGTCAATATAATACAGTCTGTTGGAGGTCAATATAATACAGTCTGGAGGTCAATATAATACAGTCTGTTGGAGGTCAATATAATACAGTCTGGAGGTCAATATAATACAGTCTGGAGGTCAATATAATAcgttaccatagggccctggtctatagtagtgtactatataaagcccagtgttatcatagggccctggtctatagtagtgtactatataaagtgttaccatagggccctggtctatagtagtgtactatataaagcccagtgttatcatagggccctggtctatagtagtgtactatataaagtgttaccatagggccctggtctatagtagtgtactatataaagcccagtgttaccatagggccctggtctatagtagtgtactatataaagtgttaccatagggccctggtctatagtagtgtactatataaagtgttaccatagggccctggtctatagtagtgtactatataaagtgttaccatagggccctggtctatagtagtgtactatataaagtgttaccacagggccctggtctatagtagtgtactatataaagtgttaccatagggccctggtctatagtagtgtactatataaagcccagtgttaccatagggccctggtctatagtagtgtactatataaagcccagtgttaccatagggccctggtctatagtagtgtactatataaagtgtttaccacagggccctggtctatagtagtgtactatataaagtgttaccatagggccctggtctatagtagtgtactatataaagcccagtgttaccatagggccctggtctatagtagtgtactatataaagcccagtgttatcatagggccctggtctatagtagtgtactatataaagcccagtgttatcatagggccctggtctatagtagtgtactatataaagtgtttaccatagggccctggtctatagtagtgtactatataaagcccagtgttaccatagggccctggtctatagtagtgtactatataaagtgtttaccacagggccctggtctatagtagtgtactatataaagcccagtgttaccatagggccctggtctatagtagtgtactatataaagcccagtgttaccac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130024 lncRNA downstream 10260 11136533 ~ 11137690 (-) True G113662
TU130023 lncRNA downstream 13988 11133651 ~ 11133962 (-) True G113661
TU130022 lncRNA downstream 15020 11132079 ~ 11132930 (-) True G113660
TU130021 lncRNA downstream 17424 11130117 ~ 11130526 (-) True G113659
TU129338 lncRNA downstream 21629 11125749 ~ 11126321 (-) True G113182
TU130038 lncRNA upstream 7667 11157517 ~ 11157750 (-) True G113669
TU130042 lncRNA upstream 19097 11168947 ~ 11169149 (-) True G113671
TU130043 lncRNA upstream 20291 11170141 ~ 11170720 (-) True G113672
TU130044 lncRNA upstream 22302 11172152 ~ 11172356 (-) True G113673
TU130046 lncRNA upstream 25037 11174887 ~ 11178729 (-) True G113675
XR_005035048.1 mRNA downstream 88477 11058984 ~ 11059473 (-) False LOC118937688
XM_036937860.1 mRNA downstream 146828 10840566 ~ 11001122 (-) False LOC110511734
XM_021586929.2 mRNA upstream 15263 11165113 ~ 11168638 (-) True lratd2b
XM_036937950.1 mRNA upstream 98187 11248037 ~ 11261509 (-) False prelid3a
XM_036937954.1 mRNA upstream 98187 11248037 ~ 11261509 (-) False prelid3a
XM_036938010.1 mRNA upstream 248242 11398092 ~ 11402862 (-) True LOC110514530
XM_036938038.1 mRNA upstream 322089 11471939 ~ 12290703 (-) False LOC110513475
TU129220 other downstream 126216 11021041 ~ 11021734 (-) True G113096
TU129027 other downstream 339706 10736729 ~ 10808244 (-) True eif3h
TU129012 other downstream 429292 10648265 ~ 10718658 (-) True G112965
TU128973 other downstream 577142 10570442 ~ 10570808 (-) True G112928
TU128520 other downstream 801015 10346471 ~ 10346935 (-) True G112567
TU130068 other upstream 60623 11210473 ~ 11218154 (-) True G113688
TU130103 other upstream 160993 11310843 ~ 11312658 (-) True G113712
TU130124 other upstream 173191 11323041 ~ 11325612 (-) True G113720
TU130157 other upstream 199492 11349342 ~ 11352741 (-) False G113733
TU130159 other upstream 199492 11349342 ~ 11352741 (-) True G113733

Expression Profile