RNA id: TU130022


Basic Information

Item Value
RNA id TU130022
length 445
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id G113660
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 11132079 ~ 11132930 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cctggtctatagtagtgtactatatagggaatagggctctggtctaaagtagtgcactatatagggaatagggccctggtctatagtagtgtactatatagggaatagggccctggtctaaagtagtgcactatatagggaatagggccctggtctaaagtagtgtactatatagggaatagggctctggtctaaagtagtgtactatacagggaatagggctccatttgggacgcatcgtGGTGGACTGTGATGGTGGACTGTGATGGTAGAAGAGTTCTGTATGGTCATGACTCTGATTAAAGATGAATATATTTGGGGATATTATTACgttacatatgtgtgtgtgtgtgtgtggtctgagaGAAAGCTTGTTGAAGTAAACAGATGAGTTGACTCACCCACAGCACAGCCTTGagggacggacacacacaccgtgacacac

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130021 lncRNA downstream 1553 11130117 ~ 11130526 (-) True G113659
TU129338 lncRNA downstream 5758 11125749 ~ 11126321 (-) True G113182
TU129337 lncRNA downstream 6853 11124958 ~ 11125226 (-) True G113181
TU129331 lncRNA downstream 17155 11114621 ~ 11114924 (-) True G113175
TU129329 lncRNA downstream 19007 11112832 ~ 11113072 (-) True G113173
TU130023 lncRNA upstream 721 11133651 ~ 11133962 (-) True G113661
TU130024 lncRNA upstream 3603 11136533 ~ 11137690 (-) True G113662
TU130031 lncRNA upstream 15020 11147950 ~ 11149850 (-) False G113666
TU130032 lncRNA upstream 16517 11149447 ~ 11149850 (-) True G113666
TU130038 lncRNA upstream 24587 11157517 ~ 11157750 (-) True G113669
XR_005035048.1 mRNA downstream 72606 11058984 ~ 11059473 (-) False LOC118937688
XM_036937860.1 mRNA downstream 130957 10840566 ~ 11001122 (-) False LOC110511734
XM_021586929.2 mRNA upstream 32183 11165113 ~ 11168638 (-) True lratd2b
XM_036937950.1 mRNA upstream 115107 11248037 ~ 11261509 (-) False prelid3a
XM_036937954.1 mRNA upstream 115107 11248037 ~ 11261509 (-) False prelid3a
XM_036938010.1 mRNA upstream 265162 11398092 ~ 11402862 (-) True LOC110514530
XM_036938038.1 mRNA upstream 339009 11471939 ~ 12290703 (-) False LOC110513475
TU129220 other downstream 110345 11021041 ~ 11021734 (-) True G113096
TU129027 other downstream 323835 10736729 ~ 10808244 (-) True eif3h
TU129012 other downstream 413421 10648265 ~ 10718658 (-) True G112965
TU128973 other downstream 561271 10570442 ~ 10570808 (-) True G112928
TU128520 other downstream 785144 10346471 ~ 10346935 (-) True G112567
TU130068 other upstream 77543 11210473 ~ 11218154 (-) True G113688
TU130103 other upstream 177913 11310843 ~ 11312658 (-) True G113712
TU130124 other upstream 190111 11323041 ~ 11325612 (-) True G113720
TU130157 other upstream 216412 11349342 ~ 11352741 (-) False G113733
TU130159 other upstream 216412 11349342 ~ 11352741 (-) True G113733

Expression Profile