RNA id: XM_036974355.1


Basic Information

Item Value
RNA id XM_036974355.1
length 7768
RNA type mRNA
GC content 0.46
exon number 22
gene id LOC110520075
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 48455210 ~ 48508839 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACATTCACTGGAATCTATACATTTGAATCTCTTATAAAAATTCTGGCAAGGGGCTTCTGTGTAGGGAAGTTTACCTTTCTCCGAGACCCATGGAATTGGTTGGATTTCTGTGTTATTGTCATGGCGCCTGAAGACCATTGTGGGAGCGCTGATCCAGTCAGTGAAGAAACTGTCAGACGTGATGATCCTCACTGTATTCTGCCTAAGTGTCTTTGCCCTAGTAGGGCTGCAGCTGTTCATGGGGAATTTAAGAAACAAATGTTTAAGGATCCCTCTTAACTCAACCAACATCTTTGATGATTCAGTCGACTTTAATGGGACGGACCTCAACAAGACCAGCTCGTTCAACTGGACCTCTTACACGAATGATCCCAAAAATTATTACTACCTCCCAGGTAAAAAAGATGCTTTGCTTTGTGGAAATGGCAGTGGTGCCGGGCTGTGCCCAGAGGGATtctggtgcatcaaagcgggcCGGAACCCAGATTACGGCTACACCAGTTTTGACACGTTCAGCTGGGCCTTCCTGTCTCTGTTCAGACTGATGACTCAGGACTACTGGGAGAACCTCTACCAGCAGACCCTGAGGGCTGCTGGGAAGCCATACATGATCTTCTTTGTGTTGGTCATCTTCCTGGGCTCCTTCTACCTTATCAACCTAATCCTGGCTGTGGTTGCCATGGCCTACGACGAGCAGAACCAGGCCACCATTGAGGAGGCTCAGCAGAAGGAGGAGGAGTTTCAGAAGCTGAAGAGACAGCAGGAGGACGCACAGGCGGCGGCAGCGGTGACAGCGGCTGAGAGTGGGGAGTTCAGTGAGAGAGGGGAGCTCACTGACACCTCCTCCGAGGCCTCCAAACTCAGTTCCAAGAGTGCCAAAGAGAGACGCAACAGGCGCAAGAAGAAAAagcaaagagaggaggaggagagaggggacaatGACAAGTTTCACAGGTCTGAGTCTGAGGGCAGTATGCAAAAGAGTCGTTTCCGCTTCTCCATAGATGCCTCCAACCTGCTCAACTACGACATGAGATGTTCCACACCACACCAGTCCTTCCTGAGTATCCGTGGACCCCTGTTCTCATCCAGACGAAACAGCCAGGCAAGCCTCTTCAGCTTCCGGGACCGAGCGCAAGACATGGGCTCGGAGAACGACTTTGCCGACGACGAGAACAGTACTTTCGAGGACAACGACAGTCGCCGGGGATCTCTGTTTGTCCCCCGGCGGAGTGACCGGCGCTCCAGCAACCTCAGCCAGAACAGCATGTCGTCACATGTCCTGTTGCCCGCCAATGGGAAGAAGCACAGCTCCGTGGACTGCAATGGGGTGGTGTCCCTGGTGGGCAGGGCTTCACTTCCCACATCACCTGAGGGTCTCCTTCTACCAGAGGTGACAGTAGATAAAGCCTCTACCGATGACAACGGCAACACTACGGAGCCAGAGTACAGAAAGGCCCGATGTGAATCGTACCAGGCCTCTATGAACTTCCTGGAGGACCCAGGGGCCAGGCAGAGGGCCTTCAGTGTAGCTAGTGTTATAACTAACACTATGGAAGAACTTGAAGAGTCGAGACAGGAATGCCCTCCTTGCTGGTACAAGTTCGCCAACACCTTCCTCATTTGGGACTGTTGTCCGGCATGGCTGAGGATCAAGAAGAGAGTCAAGATGATCGTGATGGACCCGTTTGTAGACCTGACTATCACCATATGTATTGTTCTGAACACAGTGTTCATGGCTATGGAGCACCACTCCATGTCTGTGGATTTCAAAAAAATGCTTTCTGTGGGAAACCTGGTGTTCACAGGTATCTTCACAGCTGAGATGTGTTTCAAGATTATTGCTTTGGATCCGTACTGTTATTTTAAGGAAGGCTGGAATATATTTGATGGTATCATTGTCAGTTTGAGCTTGATGGAGATTGGCTTGGCCAACGTGTCTGGAATGTCTGTCCTCAGATCGTTCCGATTGCTGAGAGTGTTCAAACTGGCCAAGTCTTGGCCCACACTGAACATGCTGATCAAGATCATTGGTAACTCAGTGGGGGCTCTGGGTAACCTCACCCTGGTCCTGGCCATCATCGTCTTCATCTTCGCGGTGGTGGGCATGCAGCTGTTTGGGAAGAACtacagagactgtgtgtgtaagatctctaCAGACTGCACACTGCCCCGCTGGCACATGCATGACTTCTTCCACTCCTTCCTGATTGTGTTCCGGGTGCTGTGTGGGGAGTGGATCGAGACCATGTGGGACTGTATGGAGGTGGCTGGCCAGAGCATGTGTCTCATCGTCTTCATGATGGTCATGGTCATCGGGAACCTGGTGgtccTGAATCTGTTCCTGGCCCTGCTGCTGAGCTCGTTCAGTGCTGATAACCTGGCGGCCACGGATGATGACAGCGAGATGAACAATCTGACGGTGGCCATAGGCCGCATCCACCAGGGCATCGCCTTTGTCAAGGCCTTGGTGTGCCGCTCCTTCCACAGCATCTGTCTGAGGAAAAAGAAGGGGAGCCTGAACGAGGACAAGCCCCTGGATGACCTCCACAGAACCAACTACAACTCCAACCACACCACTGTGGAGATCATGAAAGACCCTGAATATGTGAAGGATGACAATGGCACCACCGGTGGGGTAGGCATGGGAGTGGGTAGCAATGCAGCTGGGAAGTACATAGTCAACGACAACACTGACTACATGCAGTTCATCCACAACCCCAGTCTGACCGTCACGGTGCCCATCGCTGTGGGGGAGTCGGACTTTGAAAACCTCAACACTGAGGACTTCAGCAGCGATTCCTCGGACATAGAGGGAAGCAAAGAGCAGCTAAGTAAAGACCGTCCACTGAGCTCATCAGAGGGCAGTACAGTGGACATCAGGcccccaggagagagagagggctcggTGGACATGGAGCCTGAGGAGTCCATGGAAGCTGAAGGATGCTTCACTGATGGCTGTGTCCGTAGATTCCAATGCTGCCAAGTGAACGTTGAGGAGGGCAAGTGGAAGATGTGGTGGACGTTGAGGAAGACCTGCTTCAGGATAGTGGAGCACAACTGGTTTGAGAGCTTTATCATCTTCATGATCCTGCTCAGCAGTGGAGCGCTGGCATTTGAGGACATCTACATCGAACAGAGGAAGACCATTAAGACGGTGTTGGAGTTTGCGGACAAAGTCTTCACCTACATCTTCATCCTGGAGATGTTGCTGAAATGGGTGGCCTATGGATTTGCCAAATACTTCACCAACGCCTGGTGTTGGTTGGACTTTCTTATTGTTGACGTCTCTTTGGTCAGCCTTGTGGCCAACGCCCTGGGCTACTCTGAGCTGAGTGCCATCAAGTCCCTGAGGACGCTGCGAGCGCTGAGGCCCCTGAGAGCGCTGTCCCGCTTCGAGGGCATGAGGGTGGTCATCAACGCTCTGCTTGGAGCCATCCCCTCCATCTTCAATGTGCTGCTGGTGTGCCTCATCTTCTGGCTCATCTTCAGCATCATGGGTGTCAACCTGTTTGCAGGGAAATACTACCATTGTATCAACATGACCACGAGTGAGCGCTTCGAAGTCAGAGACGTGGCAAACAAGACAGAATGTTTGGCTTTGAAAGGTACCCACTGGAAGAATGTCAAGATCAACTTTGATAACGTGGGAGCAGGCTATCTGGCACTGTTACAAGTGGCTACATTCAAAGGCTGGATGGATATCATGTATGCAGCTGTGGACTCTCGCAATTTGGATGATCAACCCGACTACGAAGTGAATCTGTACATGTATCTGTACTTTGTGGTATTCATCATATTTGGATCCTTCTTCACACTCAACCTCTTCATTGGTGTCATTATAGACAACTTCAATCAGCAAAAGAAAAAGTTTGGAGGTCAAGACATCTTCATGACAGAGGAACAGAAGAAATACTACAATGCTATGAAGAAGCTCGGCTCAAAGAAACCCCAAAAGCCTATCCCTAGGCCAGTGAACAAGTTTCAAGGATTTGTTTTTGATTTCATTACAAAGCAAGCCTTCGACATTGTCATCATGATTCTTATATGCCTTAATATGGTCACCATGATGGTGGAGACGGATGACCAGGCAGATGACATTCGTAAAATTCTCTACAAGATCAACCTGGTGTTTATTGTCATGTTCACCGGAGAGTGTATTCTGAAGATGATCTCACTCCGACAATACTACTTTACCATTGGTTGGAATGTATTTGACTTTATCGTTGTTATCCTGTCGATAATTGGTATGTTTCTCTCGGAACTGATAGAGAAGTACTTGGTTTCACCAACCTTATTCAGAGTCATTCGACTGGCCCGAATTGGCCGTATCCTTCGCCTCATCAAGAGTGCCAAGGGAATCCGTACACTCTTGTTTGCGTTGATGATGTCACTTCCTGCATTGTTCAACATTGGTCTTCTGCTCTTCTTAGTGATGTTTATCTATGCAATCTTTGGCATGTCCAACTTTGCATACGTCAAGAAGGAGTCTGGGATTGACGACATGTTCAACTTTGAGACGTTCGGCAACAGCATGATCTGCCTGTTCCAGATCACCACGTCAGGAGGCTGGGATGTCCTGCTGGCCCCCATCCTCAACAAGGGAGAGCCAGACTGCGACAGCCGGAAAGAGCACCCAGGAAGCACGTACAAGGGGGGAGACTGTGGAAACCCCTCTGTGGCCATTATCTTCTTTGTGAGCTACATAATCATATGTTTCCTTGTTGTGGTCAACATGTACATTGCTGTCATCTTAGAGAACTTCAGTGTGGCCACTGAGGAGAGCGCTGAGCCCCTGAGCGAGGATGACTTTGAGATGTTCTACGAGGTCTGGGAGAAGTTTGATGCGCGGGCCACCCAGTTCATGGAGTATGACAAGCTGTCAGACTTTGCTGACGCCCTAGACCCCCCGCTACGCATCTCTAAGCCCAACAAGATCCAGTTGAGCTCAATGGATTTACCCATGGTGAGTGGGGAGCGCATCCACTGCCTGGACATCCTGTTTGCCTTCACCAAACGTGTCCTGGGCGAGGGCGAAGGCTTGGACATCCTCCGGGGTCAAATGGAGGAGCGCTTTATGGCCTCCAATCCTTCCAAGGTGTCCTACGAACCAATCACCACCACACTGCGCCGCAAGCTAGAGGACATGTCTGCCCTGGTCATCCAGAGAGCTTTCAGACGATATCTTCTCAAGCGTATTGTTAAGCGGGCCTCTGCCATGTACAAGGAGAAGATACAAAGTGGAGGCACGCTCCTTGATAAAGAGGTTCTCGTCATAGACAAATTTCCCGAGATCTCTACTTCAAACAgaactgacatgacaccatccACAGCTTCTCCCCCATCATATGACAGTGTCACAAAACCTGAAAAAAACAAATATGAAAAAGACAAGAGAAAGAAGGAGGtgaaggagaaaaaaaagtaCATGGATGTTGGGAAGATTTAGCATAGATTTCATTCTGCTACAAATTGTTTACAGCCTTTGAAGGTGACCAATGCGTCAAGTGAACCCCTTCTTTGGTGTGAATATCTATGCCAAACTGACAATGCTTACTTGAGTCTAGATGTAAGGTTGGTGCCTAACATGAGGTAGTGACTCAACCTCTTAGGCTGTAAGGTGACCAGTTGTTTGGATGTTCATTTCTGTGGGGACTAAAACAAATGTTTGCCAGCTTTATAGGGACAGGTAAAACATGTTGTGTGTTGTTCCAATCAGAAACATTTAGTTATACTGTAACTTCTCTTGCAGCTAGTACTTCCAGGGTTGCTTCCAGTCTCTTGCATTATAACTGCCATATGATTTACTAACTTAGTTTTCTGACAGAATCTTGTTTTTAAAACTCATAGGTTGATTGTGTGACTATTTTTGTAAACATATGTTTTACTGTAAAACGAGGGGTTTCATGTATTGCTTTAAAAAGGTAGTCGTGTTCACTTTAAATGTTCATACAACTTGACTAGTCAAGTGTGATCAAACACACATCCTTGTGGGGTGCAGGGCCGAAAGAAGTTGGCATAAAATAAATTTGGGGCCCGCACACTCATAAACCGTTTTAAAATGAAGGTACATGGTGGAGCTTATGCATGTGCGGGCTCTGTTTCGAGCATAAGACATGACTACTCATGACAACCATTATTGCTGCAGTGCAGTTAGGGGGATTGCTGCAGTTCAATCGACATGTAGACCTGCATGAATGCTTACCCATTGTTACCCATTGTTACCCATTGTTACCCACAGTGTTGTGTTACGCACCCTCACCAAAATGAGCTTGCTCTCTCCGTGATGTCTGAGGGGCTCATACTTTGATGAACCTGTATCATTATGTTACTCTCACTATTACAAATCAACAGGAAAGATTTCTCCTGAGCATACAGTCCAAATACCATTACCAACGACCGTTGCCTATAATCAGTTTTCCGAACAATAACACGCTCTAGAAAAACATAGTTTTCCTCCTTTCATTCATCAGAAACCACAGTACAATGCAGAATACATTAATCTTTAGTGCTGGCTCACAGAGTTGATACACATAGTATTCGTAGTCCAGCTCTTCTGTCCAGCTTGAACCACAATGGCCTCAAAGTCTATACTGTTTTTTCTCTTCACAGTGGTGAATGATAAAATGAACGTCCTCTGCACAGTATAGTTGTGACCATCAGGTGTAAATCGCCTCAAATAATCTCCAAGCCTCATCTGACAGGTGAAACACTGTATTCTGTGTCATATATGCTCACTTAAGAGGCATTCCAAAAGCACGTATCTTGTGTACTCTGTGGTTTTGGTACTGAAACATCATTAGTAAGTGCTATAAAACTTGCAATTTACCAAATCTAAATTGCTTTGAGTTTACCTTTCCTACCCACTTCCCAAATCATTTTCCATCATTATTGATGTatctgtatgtacatattctataatatatgaaaaatacaaatatatttgatatattATGTGATGTTTCATGTATAATGGAAtatatgaagttgttaatgttatTTAATACATATATCTATTATATTCTGCATTCTCTGCTCTATATGGCAGACAGGCCAGAGTACGAAGCATCCAGTTGAGGCCGTGGGAAGATTTTGTAGTTAGATTACACTCAATGTCTATATAAATATTGTAATATAATCATTTTTTCTTTGTACTTTACAACTGTTTTGTAAATAGTTTGCTATACAATATGGCCGCACTGTCTGCGCTATAGCCACTTTAGTTATATAAGCTTCACCTCACCCTTTCATTTGGAAACGCCTCGTGATCTAGTGAAGGGGAAATTCTCATTTGGATTCTTTCATCTTTTATTTTGTGTCATTTATAAACTGTGGTCACAGTTTACCTCACATGCTTTATCATAATAAATATCTAAGATGGAACGTCAGGTTCAGAGAATTCTGAATATGATCGTCTCAAGGCTAGTGTGACAGCACACATCTTCGATTGTTTCCTACATTTGTTTACATAGTTATCCAATTCCTCAGGATGTTACTTTTGTCAGCTGTTCCCTTTGTATAAAGTGTCACAAGTGTCTGTAATTAGAATGTTTAAAAGTATGTTATGAAGAGCATATGTTGCATGTAATAAAAACATTcctaatatgtatatactatacatGTATACACAATGAATGTTTTGATTACGTAACATTTAATAGATCACATCTTGATATGCATTATGCTTGTAGTGTATGAGTAAACTGCATGCAAGATATAACCCATCTCATTGAAAAGCCAAAAGAATAAAGAATACATGTACCT

Function

GO: NA

KEGG:

id description
K04834 SCN2A, NAV1.2; voltage-gated sodium channel type II alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU303060 lncRNA upstream 77174 48376214 ~ 48393522 (+) True G266699
TU303050 lncRNA upstream 101745 48368550 ~ 48368951 (+) True G266690
TU303040 lncRNA upstream 115165 48353412 ~ 48355531 (+) True G266682
TU302993 lncRNA upstream 155692 48314795 ~ 48315004 (+) True G266639
TU302952 lncRNA upstream 181754 48288741 ~ 48288942 (+) True G266598
TU303191 lncRNA downstream 34160 48542999 ~ 48543972 (+) False LOC110504158
TU303189 lncRNA downstream 40715 48549554 ~ 48549943 (+) True LOC110504158
TU303198 lncRNA downstream 43093 48551932 ~ 48552271 (+) True G266822
TU303212 lncRNA downstream 52131 48560970 ~ 48561184 (+) True G266831
TU303204 lncRNA downstream 142294 48651133 ~ 48667115 (+) True LOC110520080
XR_005047278.1 mRNA upstream 440999 48028238 ~ 48029697 (+) True LOC118958193
XR_005047257.1 mRNA upstream 443611 47981052 ~ 48027085 (+) False LOC110520067
XM_036974343.1 mRNA upstream 443612 47986310 ~ 48027084 (+) True LOC110520067
XM_036974342.1 mRNA upstream 443613 47981053 ~ 48027083 (+) False LOC110520067
XM_021597077.2 mRNA upstream 493858 47971973 ~ 47976838 (+) True LOC110520066
LOC110504158 mRNA downstream 34181 48543020 ~ 48563667 (+) False LOC110504158
XM_036974360.1 mRNA downstream 53812 48562651 ~ 48577839 (+) True LOC110520076
XM_036974364.1 mRNA downstream 136271 48645110 ~ 48667086 (+) False LOC110520080
XM_021597113.2 mRNA downstream 136277 48645116 ~ 48667086 (+) False LOC110520080
XM_036974362.1 mRNA downstream 136728 48645567 ~ 48667086 (+) False LOC110520080
TU300304 other upstream 1638452 46831008 ~ 46832244 (+) False LOC110520046
TU300305 other upstream 1638492 46831008 ~ 46832204 (+) True LOC110520046
TU300303 other upstream 1638562 46831008 ~ 46832134 (+) False LOC110520046
TU299995 other upstream 2285892 46184134 ~ 46184804 (+) True G263859
TU299866 other upstream 2391271 46075484 ~ 46079425 (+) True G263733
TU303780 other downstream 1001964 49510803 ~ 49512475 (+) True G267358
TU303803 other downstream 1045659 49554498 ~ 49555838 (+) True G267381
TU303972 other downstream 1327778 49836617 ~ 49855502 (+) True G267529
TU305367 other downstream 1653462 50162301 ~ 50183026 (+) True hoxd3a
TU305730 other downstream 2093463 50602302 ~ 50604816 (+) True LOC110520146

Expression Profile