RNA id: XM_021597218.2


Basic Information

Item Value
RNA id XM_021597218.2
length 2559
RNA type mRNA
GC content 0.42
exon number 4
gene id hoxd3a
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 50162278 ~ 50184327 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTTCTCTGCATTCTGCTGCTATACCGTCCCCAACCAAAACGCTCAGCCTACACTCGCTCAAAATTTGCCTTATTATTGCCTGAATTAAAGTGTGAACCTACCAGATCCTCGATAACTATATAGTTATTTACTTGACTTGTCAGGGCTAGCGTTTCTTCCTGTGTGCATACCGAACATCGAAAGGAGAGCCTCTGCTGTTCATCATCCGTATAGTTTCACTGTAACATCATGTATTATTTATACAGAGTCACCACAAGAAAACACATGGATTACCCAACTGCATTAGGTCGAGGTGGATGTAACGATGAGCACGTGAAGAAAAATACGACACATATCTGCATAAAATACGGTCAAGGAATACAGAGGCGGTGGGAAACTCCAATCACGTGATACAAGAACACCCATGCCATTGGATAGGGCCTTGGTTTGaatcttcacaatgcagaaagctACATACTACGATAATTCTGGACTTTTTGGAAGCTACTCTTACCCCAAATCCGACTCATATATGTATGGCCCATCTCACCAGCCCTACCCCACTTCTAACCTTGAGAGTGATTATCAGGGTCCAGTTTGTCCAATACAAACCACAACTGTACGGCCACCAACTCATAAAGACAATGACATGAATGGCTGCATGCGACCAAGTAGCAGCCAAGGAAACACCCAACAGTCGAGTATTGGTGAACAGCCGCAGGCACCTCCATTGTCGGCATCTTCCCCTAACTCCAGCAACACTTCATCTCAGAAGAAGAAATCTCCCCCAAACAATGCTTCAAATACTGCCACCCCAGTCATTAACAAGCAAATTTTCCCATGGATGAAGGAGACGCGATCGAACGCCAAACAGAAAAGCAACAGCAGCAACAATTGTACAACTGCAgaagGTGAGTCCTGCGATGAAAAAAGTCCACCTGGTCCAGCCTCCAAACGGGTCCGAACTGCCTACACCAGTGCACAACTTGTAGAACTTGAGAAGGAGTTCCATTTCAACCGGTACCTGTGTCGTCCCCGAAGAGTGGAGATGGCTAATTTATTGAATCTCACTGAGCGCCAAATAAAGATCTGGTTTCAAAACAGAAGGATGAAATACAAAAAGGATCAGAAGGCTAAGGGGATAATGCACTCTCCCATCGGACACTCCCCGGACAGAAGCCCACCATTAAGTGGCCCAAATCACATTGGATATTCTGTAAATGTAAACAGCCTCAGCTATGATGCGCCCTCGCCCCCGTCATTCGCCAAACCCCAGCAAAACATGTACGGCTTGGCTGCGTACACGGCACCATTAGGTGGTTGCATACCGCAACAAAAAAGGTATCCGGGGTCCGAATACGAACACCACAGCATGCAAGGCAATGGTGGCTTTGCCAACGCTAATTTGCAAGGCAGTCCGGTGTACGTTGGGGGAAATTTCGTTGATTCCATGCCAGCCTCGGGCCCCATGTTCAACCTCGGCCatctccctcatccctcatctGCCAGCGTGGACTACAGCTGTGCCGCTCAGATTCCAGGCAACCACCACCATGGACCCTGTGACCCCCATCCCACATACACAGACCTCACCTCTCACCATGCGTCTCAGGGAAGGATTCAGGAAGCGCCTAAACTAACGCATTTGTAATTTGTGAGGAATCCATCTGTGTGCCCAAATTATGTTACGCTCTTTTATTACCTCACTAGTCTAAAGTAATTTATATGATTACACTACAAGTGAGTCATGTGTATTACCCAGtattattattgatattactATTAATGCTATTGTGTAATTATTTTCTAAGAATAGCTGTGGTACATTTTTCTTGACTGTTGAGGATGCGTAGAGGAAGACCGTTTGTTTGTCAGTTGTTCGTTTTCTGAAGTGCAATGCGCAGTATGGGGACTGAAAATGTCATAACATTACTTGAAGGTAAGTCCTGTAGATCTGACAGTAGTCACCCATCTTTATAGGGATGGATTTTATAGAAAAAAAACTCTAAGGTGTCTGTTTGTTAATTTCAAATTTTCTAAATTTGAAGCGTCTTATTTATTTTTCCAAGATTGTATTGCATTTATCTCCTTTCCTATATGTATTATTTAACGATTTTTTGTATCACACATTATTTATCATTTACATATATGCCTATTTATATGGACATCTAGAATTTATGCAACATAGTTCGACAGACTTTGACATCATAGCCCTTCAATAGGTACACAGGTTTTTGGTGAATGCTAGTTTTAAGACATGGTTTCAATGGCTGGTGGTTTTATGTTGTTGTAGTAGAAACCCCCTAAGTGTAAATCTTGGAGTATTGGGGCATTTTTCATGATTTATCTTGTGTCAATGCCTCTATGAAAAACAAAGTTATATGTAGCCTTTTGAAATACCGAATATTATAAAAATGTAACACACCAGCATGTCATTTGTCGTCATTGCCAATTTTCATATCACGTCATTGTTATTTCATCAGTTGGACTGTCCATGCATACATTTATGAAACGCTAATGAtatgaaaatgttatattttattgTGTTTAACATTTTGTAAATAAAGTGCTTAAATTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU305379 lncRNA upstream 21364 50139433 ~ 50140914 (+) True hoxd12a
TU305308 lncRNA upstream 59222 50102779 ~ 50103056 (+) True G268714
TU305184 lncRNA upstream 77121 50084110 ~ 50085157 (+) False G268604
TU305504 lncRNA downstream 48144 50232471 ~ 50232690 (+) True G268877
TU305583 lncRNA downstream 108358 50292685 ~ 50292893 (+) True G268956
TU305597 lncRNA downstream 128185 50312512 ~ 50312731 (+) True G268970
TU305565 lncRNA downstream 137160 50321487 ~ 50322542 (+) True G268938
TU305566 lncRNA downstream 138442 50322769 ~ 50323146 (+) True G268939
XM_021597214.2 mRNA upstream 3430 50155835 ~ 50158848 (+) True hoxd9a
XM_021597213.2 mRNA upstream 9051 50146811 ~ 50153227 (+) True hoxd10a
XM_021597212.2 mRNA upstream 15786 50144655 ~ 50146492 (+) True hoxd11a
XM_021597211.2 mRNA upstream 21274 50139213 ~ 50141004 (+) False hoxd12a
XM_021584389.2 mRNA upstream 25681 50134695 ~ 50136597 (+) True hoxd13a
XM_021584398.2 mRNA downstream 2838 50187165 ~ 50188694 (+) True LOC110505268
XM_021597221.2 mRNA downstream 131743 50316070 ~ 50320201 (+) False LOC110520134
XM_021597222.2 mRNA downstream 131743 50316070 ~ 50321294 (+) True LOC110520134
XR_002472946.2 mRNA downstream 149973 50334300 ~ 50335908 (+) False LOC110520136
XM_036974478.1 mRNA downstream 153840 50338167 ~ 50367192 (+) False agps
TU303972 other upstream 306776 49836617 ~ 49855502 (+) True G267529
TU303803 other upstream 606440 49554498 ~ 49555838 (+) True G267381
TU303780 other upstream 649803 49510803 ~ 49512475 (+) True G267358
TU300304 other upstream 3330034 46831008 ~ 46832244 (+) False LOC110520046
TU305730 other downstream 417975 50602302 ~ 50604816 (+) True LOC110520146
TU305958 other downstream 714262 50898589 ~ 50900277 (+) True G269291
TU307177 other downstream 1389653 51573980 ~ 51578683 (+) False LOC110520169
TU308945 other downstream 2982625 53166952 ~ 53172428 (+) True acvr2aa
TU309190 other downstream 3037100 53221427 ~ 53223265 (+) True LOC110520187

Expression Profile