RNA id: TCONS_00032190


Basic Information

Item Value
RNA id TCONS_00032190
length 4344
RNA type mRNA
GC content 0.50
exon number 21
gene id XLOC_016344
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 22931159 ~ 22966127 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GATGCCAATGGTCGATTTGCCGGGATACGAAACGGATGGCGAGTGTGGGATTCGTGTGTACGGAAGAACTTGAGAGGTCGTGAAGATGAATTCTCAGCAGTATCCTCGTCCTGGACTCCCCTCCGGTCTGGGACAAGGACAAACCGCAGGCAACAACACTGCAGGATTTCCAGGAAGTCAAAAGAGCACAGGACATGAAGACTCTAATCACGCACCACGTGAGCTGATGTCTAGTGGAGCCACAGTATTCAGAGATGACAAGCAGGAGACGGTAGTGGTGCGACCCTACCCTCAACCCCAAATGCAGCCCCCATCCCACGGAGCAGCCCCGACTCTGCCCCCTCCTCTCCCTCAGCACCTTCCCATTCAACCAGTCTCTGTGTCAGCAGCTCCATCCCACCTCCCTCAGGGTCTCTCCCTTGCCTTCACTGAGGGTTCTCTGAAGTCTGCCCTGAAGGCACCCATGTCGAGCCGTGTGATCGCTCCAGCTCCTGTGCCAACACCAAGCCATCTCACTCTGCCCCCCAAGGTGCCTGGTCATCTCACTGCTACCATGGAGTCCACACAGGCCTCTGGAATCCCTGTGGCCACCATCAGTGGTCAGCAGGGTCATAGCGGTAACCTGCATCACCTAATGACCAGTGTGCAGATCATTCGCAGTGGAGCGCCTGTTCAACAGATTGGATCTTCTGCGGCTCCTCAGCATTGTTTTCCCTCCCATTTACCCAGAGGCGCGGCTGCTGCAGCTGTGATGTCAAGCTCCAAAGGAGCCACAGGACTGAGACCAGCTGCCGGTCCCAGCTCTGCCACTGGCCAGCCTACTGTCCAGCACATCATCCACCAACCAATCCAGTCCCGGCCTATAGTCACTACCTCTACAGCAGTTCTGCCTACAGTAGTGGCTCCAGTGACGGCCACCAGACCTCAGTCTCCAGTTATCACCACAGTAGCTGCCCACTCTGGAGACATGGTGCATGGTCGCTCGGCTGTGGCTATCCACCCTCCACAAGCGACCTTGAGTATCCAGCGTCCGCCGCCCTCGCGGGACACGCCAACACGAATCACCCTGCCCTCCCATCCTGCTATTGCTGCTCAGAAAGCCCTTTCTCACTCAGTTGCACAGAAGCCCATTTTCAGCACTGTGACGCCCGTTGCTGCTGCAACAGTGGCTCCGATTCAGGTCACCAACACTGCACCATCACCCACTACAACAGGCTCCACCCCCCACACGCAAATATCCAATAGTAACATTGTCACTATGACAGTGGCCTCCCACTCCTCTCATGCCACAGCAGTGACCACATCCACCATCCCTGTGGCTAAAGTAGTTCCGCAGCCCATCACACACACATCACCACGTATTCAGTCTGAATACACAGAAAGAGGGAACCTCATTCCAATCTCTGGCCACCGCTCCTCTCCCAACCCCATCACCATGGAGAACCGCACTGACAACAGACAATCTGTTCCAGTACAGTTTCAGTACTTCCTGCCCACCTACCAGTCAGCACCATACCCGCTGACCCACACATACACCCCAATCACCAGCTCTGTATCATCCATACGCCCTTATCCAGTAACTGCTCAGGCCCCCAGTGCAGCCATGCCCACCCAAGCTGGTGTAGGAGTCGCGTCTGCAGTTCATCTGAACTCAATGCAGCTGATGACGGTTGACCGCATCACTCAGATCAACACTCAAAACATCCAACCGGGGGCCATGACAGCGCAGGGCATCCAACCTACACCCATCCCAGCCCAGAACCTGCATACATCTGCCCAGATCACCACCCCAAGTATCCAGCCTTCACCAGTTAACCAACAACAGCCTCCAACTGAGTCTAAAGCTTCAGttgtaCTGGCTGATGGTTCCACACTAATGGCTAACTCTATAAGCAATGCATTTAGCAACAGTCAGCCTACCACCACTCTGGCCCAGACACACATTCAGAATGCCAACACGGGAACACCATCACTTGTGACGTCCCCTCGACCCAGCATTCTGCGTAAAAAACCTGCTAATGAAGGTGCTGCTGTTAGGAAGAATCTGATCCCAGCTCAGCTTGGTGACACCACAGCCCCCAGAATCGATGGACCCATCAGGAGTGCATCAGGATCACCTCGTCCTGCAGGAGTGAAGCCCAAACCAGATATCCACATGAGCCTCGCCCCGTCTGTGGCTGCTGCAATAGAGGCAATTCCTAGCCAGGGAACTGAACAGCAAGCACAACACGTGGGACCACCTTCTTCTCAGCTGGCCTCTCAACCTCTTCCATCCCTCCTGGCATCAGTAACACCACCTTCCCTACCTGCACCTGCTCTTTCAGCCTTGCCTGCAGCCATGACTGTTACTCAGCCAATCCCCTCAATGACCAATGTAGTGGCTCAACCCATTCAGCCAGCAGCCAATAATACTTCAGTATGTACAATCAACTCCAATCTTCCAGAGTTGAATATTAAGCAGGAGCCGGAACCAATGGATAGTTCAAAACCAGTGGCCTTAGGGCCAAACAGTGGTGCACAGATGTTGACAGTGCCTCCTACAGACCTCACGCTTGGAGCTTCACCCAGAAAGAAGCCCCGCAAACAACAGCACATCATCTCCACAGAGGAGAGCGAGATGATGGAGACCAACAGTACAGATGAGGAGAAGTTTCCTCCCAAACCCCTCAGCCAACGGGCTGAGAAACGCAAGTCCCCTCCTAAAGAATACATCGATGAGGAGGGAGTTCGTTATGTTCCCGCCCGAGTTCGCCCTCCGATTACCCTGTTACGCCACTACCGGAACCCCTGGAAAGCAGCATACCATCACTTTCAGAGATACAGCGACGTCCGTATAAAGGAGGACAAGAAGGGCAGCATGCAGGATGTGGCCAATCAGAAGGGAGTTGTGTGCAGAGCCCAGGGCTGGAAAATTCACCTCTGTGCAGCTCAGCTCATGCAGTTGTCCAATCTGGAGCATGACGTCTACAGTCGCCTGACGACTCTCCAGGAAGGCTTCGTTCCAAAGAAGAAGGCCGGAGCCGATGTTGATCTTCACCGTATAAATGAGCTCATACAGGGCAACATGCAGCGCTGCAAACTAGTGATGGACCAAATCACAGAAGCCCGAGACTCCATGTTGAAGGTGCTGGACCATAAAGAGCGCGTCTTGAAGCTGCTCAACAAGAACAGCAGCACTAAGAAGCTCAACAAGCTGAAGCGCAAGGACCGAGCGTGAGACAAACTGACCTGTGCTTCAGCACGAACACAGAAAACCTCCTGCTCCAAGACTTCTCGTCTCTCTTTATCTCTACCAGAGATAATTCACTTCCAGTCCTGATCCGATGGCAAGACATCTCTATCTGGCAAGCCCTTCCTTTCCCAGCACACACTGAAGATATAGGAAATGACAGTGTTAAATGAACAACAACATCTTTAACAGTATCTTCGCTGATATATGAACGTTTAAATGTTTCATTTCAATCAAGACGCCTTAACTGGGTCACTATTTTAGGGACGTTTTTGGATGTTGATTCCattttaaagttatatttaagCATCCATGGGTGAACTCTCAGTAAAAGCAATGCTGTATAATCTTCACGTTCTAGATTATCTTCACCACTATTTCATTTGGGTGCCTTGAATGGTGATCTTGTATTTTGACAGTCATCTGTACTGTATTCAACACCAAATGACAGTATTAGGTAATGGCCGTTCTTCGTACTGGAAGAGTTCCACTTTGTGTTGTAGCACTCAAAACAATAAGAACTAAGAAGCCATAACGATACCATCCTCATTGTAGTAAACAAAGACTGAAGCATTTTACCACATGTGCATTGTGGGAAACGTTAAAGGTGCTTTGGTGAATGGAGTATTGTGCCTTTCTGTGTGCCTCATGTAACATGGGTTTGGATTGCTGGAAGCGGTTTCTCTGACGGTTTTTCGGAGTCTGAATGTCTGAATCATTTTATGTTCTTGCGTCACTGCCTGTCGATGTGTGAAGATCGTTTTTATGTATCATCAGTCTTAGAACCGCTGCTCCAGGTACAACTCTCTGGATCGGTTCATTGGTCATGTAAGCATTAACGGTGGTGAGAATCATGTTCAGAATCGCATCACGTCAGATTTAGAGGAGAAATATGATTGTTGTGTATCTAAGTTAAACCTAAGTATATGAAACATAAGCCCTCTTCCATTTTGTTTACTACCTGTATGAacaatattatgtttatttttccagTTAAGTTGCTTGAAGAAGTGTCATTTGTGGCAAAGACGAAGTGTTGTATGCTGTTTCATTTGGAATGACATTTCATGTTGCACTCCGCTGCTGAAGTACAGTAAAGACACTTTGTACATCTA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0008345 larval locomotory behavior biological_process
GO:0021508 floor plate formation biological_process
GO:0001966 thigmotaxis biological_process
GO:0070822 Sin3-type complex cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-570 Acts upstream of or within floor plate formation; larval locomotory behavior; and thigmotaxis. Predicted to be located in nucleus. Predicted to be part of Sin3-type complex. Orthologous to human SAP130 (Sin3A associated protein 130).

Ensembl:

ensembl_id ENSDART00000143412

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033820 lncRNA downstream 63635 22857105 ~ 22868720 (-) True XLOC_016341
TCONS_00033819 lncRNA downstream 80650 22845662 ~ 22851705 (-) True XLOC_016340
TCONS_00033818 lncRNA downstream 169900 22758806 ~ 22762455 (-) True XLOC_016339
TCONS_00033817 lncRNA downstream 204924 22707739 ~ 22727431 (-) True XLOC_016338
TCONS_00032183 lncRNA downstream 245697 22682860 ~ 22686658 (-) True XLOC_016337
TCONS_00032193 lncRNA upstream 8110 22974186 ~ 22979578 (-) False XLOC_016345
TCONS_00032195 lncRNA upstream 20180 22986256 ~ 22987491 (-) False XLOC_016345
TCONS_00033821 lncRNA upstream 59169 23025245 ~ 23026907 (-) False XLOC_016346
TCONS_00033822 lncRNA upstream 59169 23025245 ~ 23027062 (-) True XLOC_016346
TCONS_00032201 lncRNA upstream 118563 23084639 ~ 23087324 (-) True XLOC_016347
TCONS_00032184 mRNA downstream 4397 22880605 ~ 22927958 (-) False XLOC_016342
TCONS_00032185 mRNA downstream 4774 22880993 ~ 22927581 (-) True XLOC_016342
TCONS_00032182 mRNA downstream 243704 22677015 ~ 22688651 (-) False XLOC_016337
TCONS_00032179 mRNA downstream 272123 22652981 ~ 22660232 (-) False XLOC_016336
TCONS_00032180 mRNA downstream 272905 22653123 ~ 22659450 (-) True XLOC_016336
TCONS_00032192 mRNA upstream 4064 22970140 ~ 22993633 (-) False XLOC_016345
TCONS_00032194 mRNA upstream 13856 22979932 ~ 22993601 (-) False XLOC_016345
TCONS_00032197 mRNA upstream 24002 22990078 ~ 23004355 (-) False XLOC_016345
TCONS_00032196 mRNA upstream 24002 22990078 ~ 23004355 (-) False XLOC_016345
TCONS_00032198 mRNA upstream 27882 22993958 ~ 23004305 (-) False XLOC_016345
TCONS_00032186 other downstream 34954 22897285 ~ 22897401 (-) True XLOC_016343
TCONS_00032172 other downstream 497809 22434430 ~ 22434546 (-) True XLOC_016331
TCONS_00032140 other downstream 2174656 20757582 ~ 20757699 (-) True XLOC_016303
TCONS_00032138 other downstream 2227832 20702226 ~ 20704523 (-) False XLOC_016302
TCONS_00032199 other upstream 27945 22994021 ~ 23001370 (-) False XLOC_016345
TCONS_00032238 other upstream 1295141 24261217 ~ 24261296 (-) True XLOC_016372
TCONS_00032244 other upstream 1312763 24278839 ~ 24280795 (-) False XLOC_016373
TCONS_00032251 other upstream 1345691 24311767 ~ 24317208 (-) False XLOC_016374
TCONS_00032254 other upstream 1347669 24313745 ~ 24317205 (-) False XLOC_016374

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000004_06252342_06268652.mRNA True 3545 mRNA 0.53 19 CI01000004 6252342 ~ 6269155 (+)