RNA id: TCONS_00033817


Basic Information

Item Value
RNA id TCONS_00033817
length 810
lncRNA type antisense_over
GC content 0.51
exon number 3
gene id XLOC_016338
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 22707739 ~ 22727431 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CACCAACCTTCCCACTAAACTGAACAGAGGCCAGCGGTCGTAAAAGGGGTCCTGGCCATCGCTGACACCTGGGCAGCGCTCGcccacaccatcatcatcatcctcctcctcctctctccCAAGCTCAGAGCCATTGTCTTCCACAAAGATCTCATCGTCCAggtcctccagctcctcctcctccacctccacctTCCCATAATGCCGCTCATCGGCGAGTTCGGTTATGTCAGAGTCAGGGTCGGAAAGGGTGGGGGAGAGGGTAAGGCCACTCATGCGCTCGCTCATGCACGTGTTGAGAATGGGAGTGCTGGTGCAGCCGGAGACATGGGAACTGGGCTCTAGGACCACCGTACCCTCTCCAATGGCATTTGTGGTACTTGTGAAGATACAGTGTTCGTCTTTGATGAAGTGGCCACTTAACACAATGTCCTGCCGACTGCTGGCATCCTCACGACCGACCCTGCAGAGAATCCATCAGGTCCTGGATGTCATTGTAGGAAGTAACAGCCAGTTTTGACAGGTCCTCCACGTAGGGTCCCATCAGAGGATGCTCTCGCACACGCAGATTCCCCTTGTTCTTTGGGTTCAGAAGGTCCCGTACGCGCTCACAGTAGATCTCCATGTAACTCACCTgagaaaacaacaataataacagttACTTCAGTTTCATTAGTAAGAAAGCAAGTTACTATAATTGAGTTTCTCTTACCTCAACCGAGTATGACATGTTGTTGTCATTATTGTCATTGATCTTGGTAAACAGGTCCTCGCAGAGCTGTCACAGAAAGATTaagcattaaaaaatgt

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00032183 lncRNA downstream 21081 22682860 ~ 22686658 (-) True XLOC_016337
TCONS_00032181 lncRNA downstream 29888 22676743 ~ 22677851 (-) False XLOC_016337
TCONS_00033816 lncRNA downstream 298550 22389790 ~ 22409189 (-) True XLOC_016330
TCONS_00033815 lncRNA downstream 298561 22389790 ~ 22409178 (-) False XLOC_016330
TCONS_00033367 lncRNA downstream 344306 22353582 ~ 22363433 (-) True XLOC_016329
TCONS_00033818 lncRNA upstream 31375 22758806 ~ 22762455 (-) True XLOC_016339
TCONS_00033819 lncRNA upstream 118231 22845662 ~ 22851705 (-) True XLOC_016340
TCONS_00033820 lncRNA upstream 129674 22857105 ~ 22868720 (-) True XLOC_016341
TCONS_00032193 lncRNA upstream 246755 22974186 ~ 22979578 (-) False XLOC_016345
TCONS_00032195 lncRNA upstream 258825 22986256 ~ 22987491 (-) False XLOC_016345
TCONS_00032182 mRNA downstream 19088 22677015 ~ 22688651 (-) False XLOC_016337
TCONS_00032179 mRNA downstream 47507 22652981 ~ 22660232 (-) False XLOC_016336
TCONS_00032180 mRNA downstream 48289 22653123 ~ 22659450 (-) True XLOC_016336
TCONS_00032177 mRNA downstream 71018 22617675 ~ 22636721 (-) False XLOC_016335
TCONS_00032178 mRNA downstream 76241 22617936 ~ 22631498 (-) True XLOC_016335
TCONS_00032184 mRNA upstream 153174 22880605 ~ 22927958 (-) False XLOC_016342
TCONS_00032185 mRNA upstream 153562 22880993 ~ 22927581 (-) True XLOC_016342
TCONS_00032189 mRNA upstream 203728 22931159 ~ 22966127 (-) False XLOC_016344
TCONS_00032188 mRNA upstream 203728 22931159 ~ 22966127 (-) False XLOC_016344
TCONS_00032187 mRNA upstream 203728 22931159 ~ 22966127 (-) False XLOC_016344
TCONS_00032172 other downstream 273193 22434430 ~ 22434546 (-) True XLOC_016331
TCONS_00032140 other downstream 1950040 20757582 ~ 20757699 (-) True XLOC_016303
TCONS_00032138 other downstream 2003216 20702226 ~ 20704523 (-) False XLOC_016302
TCONS_00032139 other downstream 2003216 20702706 ~ 20704523 (-) True XLOC_016302
TCONS_00032137 other downstream 2005003 20701088 ~ 20702736 (-) False XLOC_016302
TCONS_00032186 other upstream 169854 22897285 ~ 22897401 (-) True XLOC_016343
TCONS_00032199 other upstream 266590 22994021 ~ 23001370 (-) False XLOC_016345
TCONS_00032238 other upstream 1533786 24261217 ~ 24261296 (-) True XLOC_016372
TCONS_00032244 other upstream 1551408 24278839 ~ 24280795 (-) False XLOC_016373
TCONS_00032251 other upstream 1584336 24311767 ~ 24317208 (-) False XLOC_016374

Expression Profile

//