RNA id: TCONS_00043027


Basic Information

Item Value
RNA id TCONS_00043027
length 6239
RNA type mRNA
GC content 0.53
exon number 36
gene id XLOC_021676
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 23485858 ~ 23914687 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACTCTCAGCACAGATATGAGCGCAGACCGCACACAACTTTGAGGAACATCGAGAGCAGCGCGCGCTAGGATTACTATTTTCACTCAACTAACTGCAGAAGTCCTCCGGCGTTTGTATTGCGAGTTCCCAACTTTCCTTTTCATCCGTTCGGTTTGGCCATGGGCTCTGCGGACAGAAAAGCGGTTTATTGGCCCGTTTGGTCATTTGCTCTGGTTTTTGTGCTTTTGATTCAGCGTTGTCATGGAGGTTGTTCCGAAAAGGAGCTGGAGAAGAGAGAAGAAGAAGCGAATGTAGTTTTAACCGGGACTGTGGAGGAGATCTTGAACATGGATCCGGTGCACAACACTTATTCCTGCAAGGTCAGAGTATGGCGCTACCTGAAAGGCAAGACCATGGTAAATGGAGAAGTGCTGCTGGATGGAGGAAACAAAGTGATGATCGGTGGGTTTGGGGACCCCCATATTTGTGACAATCAAGTGGCCACCGGAGATACCCGCATTTTCTTTGTCAACTTGGCTCCTGAGTACATGTGGCCGAACCACAAGAACGAACTGATGCTCAACTCAAGCCTGATGAGGATTACTCTCCGCAACTTGGAGGAGGTAGAGCACTGCgttgaagATAAACCTGTTCACTTCACACCGGCACCTCCTCCTGATGGTTGCAGAGGGAAGTTGTGCGGATTTGGAGCGGTGTGTGAGAGAGACCAAGCTGACCCATCTaaaggagagtgtgtgtgtaagaagaTTGTGTGTACATCTGTGGTGGCGCCAGTGTGCGGATCTGACTCCTCCACCTATTCCAATGAGTGTGAGCTGGAGAAGGCTCAGTGCAATACACAGAGACGCATCAAGGTGATGCGCAAAGGCCCCTGCGCCCTCAAGGACCCGTGCAGTGAGGTAACCTGTAGCTTTGGCAGCACCTGCATCCAGTCATCGGATGGTCTGTCCGCCAAGTGTATGTGTCCTCTGAGCTGTGAAAACGTCCCCAAGCATGTGGTGTGTGGCAGTGACGGCCTGGACTACCAAAGCGAATGTGAACTCAACATGAAGGCCTGCGCCACTCAGAAGAACATCCGTGTGCATCACCAGGGCCGCTGCGATCCTTGCAGTGACACTCTGAACAGCTTAAGCACAGCCTGTCGAGTCAACCCAAAGACCTACCAGCAGATTACCTTTGCCCCGGCTGAGTCTTGTCCGCCTGACGAAATGCCCATCTGTGCCAGCGACGGACACACCTACGAGAGCATGTGTCAGATGGAGCGCACTGCCCTGAAGAACAACCTGGAGCTCAAAAAGGTCTCTTTAGGCAGCTGCAAGGAAAAAGGGGGCTGCCCGAATGGTTGTAAGTTCAACGCCATATGTTTGCTGGATAATGGAGAGTTTCGGTGCTCCTGCGATCCCATACAATGCGACGGCACGTACAAGCCCCTGTGCGGAAAGGATGGCAAGACATACCCCAACGACTGCGAGAGGAAACTGCAGGAATGCCGGACCCAAAAAGACATCCCTGTCAAACAACAAGGGCCCTGTGATCTTAACCTGGAGAGCCCCTGCCTGAAGAAGACCTGCGAGTTTGGAGCCGTGTGCGTGGTGAAGAACAGCGAAGCAGTGTGTGAATGCTCAGACGCCTGTCCGCAGGACCAAGACCCTGTTTGCGGCAGCGATGGGCACACGTACAGCAGCTCATGTCAAATGAAGGCCATGGGATGCGCTCTTCAGAAACAGATACAGATGCAACACAAAGGACCATGTGCAGATGAGTCCTGCACCAACTGCTCGTTTGGCGCGATCTGTGATGCCCAGACTGGCCGGTGCGTGTGCCCTAAAGGCTGTTTGGAAACACGGCAGCCCGTATGCGGCAGCGACGGCACCACGTATGACAACGAGTGCAAGCTCAACGTCCAAGCCTGCACTAAACAGCTGGATCTCAAGGTGGTGGCCCATGGAGAATGCAAAACCTGTGGCAGCACTGTGTGTAGCTGGGGGTCGCAGTGCGTGAACAACAAGTGTGAGTGTCAGCAGTGCACTGGTCAGCCGGTGAAACCCGTGTGTGGCAGCGACGGCAACACATACAACAACGACTGCGAGCTGAGACTGGCCTCCTGTCAGAAACAGAGGAAGATAGAGGTGGCCAAGCCTGGCGTCTGCGATGAAGACTGTGGTTCAGGAGGCTCCGGCTCGGGATCTGAGACTTGTGAACAGGACCGATGTCGCCGATATGGAGGAACGTGGGACGATGACATGGAGGACGAGCGATGTGTTTGTGAACTAAACTGTCAGATTGTGCTGCACAGCCCGGTGTGCGGCTCTGATGGAAACACGTACTCCAGCGACTGTGAGCTCAAGAAGACCAGGTGCGAAAAGCAAATAGACCTGAGTGTCCAAAGCCAAGGGCCCTGTCCAACTATCGTATCACCACCTCCAGAGCTTGTTGCCTCCCAGCACTGTAGCCAAACAGTTTATGGATGTTGTGAAGATAACAAGACCGCTGCCCTGGGTGTTGGACTGGCTGGATGTCCTAgtaTGTGTCAGTGCAATCATTACGGCTCATACGGAGGCACATGTGACCCCTCGACTGGCCAGTGTTCCTGTAAACCTGGTGTCGGTGGACTGAAGTGCGACCGCTGTGAGCCCGGATTTTGGAACTTCCGTGGCATTGTCACAGAAAACATGAGCGGCTGCACACCGTGCAACTGTGATGGAGTGGGTTCGGTTCGTGATGACTGCGAGCAGATGTCAGGCCTGTGCTCCTGTAAGCCTGGAGTTAAGGGCATGAAATGCAACGTGTGCCCTGATGGCAGCAAGATGGGAGTCAACGGCTGTGACAAAGGACCTAAGGCTCCCAAGTCCTGTGCTGAGCTTGTGTGCCACTTTGGGTCTTCATGCGTGGAGGTGAATGGACAGGCTCACTGTGAGTGTCCTTCACCAGATTGTGATGAGAAAAACAAGACCAAGGTATGTGGTTCTGATGGGGTCACCTATGCAGACCGGTGCCAGCTGAAGACCATCGCATGCCGACAAGATAAAGAGATCAAGGTGGAGCATTTAGGCCAGTGTAAAGAATCCATTGAGCTGACGGCCAAACCCACCCCCTTCCCAACCACCCACCGCACCACCCCTCCCACCGCTCACGTCAAGGTCACCAAACAGCGACATGGCCACCGCACCACCACTCCGGACAGCTATGTGGTGGAGGCAATGCCTCCACCGAGGTTGGATGGAGCGCGAAAGTTTTCCAGCCCTTTCACCACCCACCGTCCCACTACACCCTACAAACCACTCCGCACCTCATCCCCACCTCTGGACTTTGACGAGTCGGGCAGTGGAGAGCCCAGTGGGGATGATGAGATGGTGAGCGGAATGGAGGAGAGCGGAGAAGAGCCACTTGGTACAACAGTAGCTACTACCACTCTTCCCACAGCTGAGGAGCGATCGTCCTGTGACAACACAGCGTTCGGCTGCTGTCCCGATGGGAAGACGGCCGCCGTCAACTCAGAGGGCACAAACTGCCCATCCACCATGCGTTTCAGCGGCTTCCTGCACCTGGATAAGGTTGAGGGTCAGGAGGTCTTCTACACGCCTGAGATGGAGGACCCCAAATCGGAACTGTTTGGTGAAACGGCCCGAAGCATCGAGAGCGCTATGAATGAGTTGTTCCGCAAGTCTGATGTCCAGAAAGACTTCCAGAGTGTCCGTGTGAGGAATCTATCCCCCAGCAACTCCATAATAGCACATTTCGAGGCTCACTTCGACCCAGACACAAGGTTCAATGTGGGGGATATTGAGGGAGCCCTTCTCAAACAGCTTAAGGCGTCTAAAGACACTGGCATCGTTGTGAAGAAACCAGAGGAAGAGAACATTCGCATCAACAACTATGGTCTTTCAACTGTTCCTTTCTTTACCACCACAACAACCACTGTGGCATCTGTCACGACTCccactaccaccaccaccacaatgTCTCCCAGTTCTGCTTATACCACTCTCCGGCCCATCACTACTAGACGACCCTTCACAAGAACCACCACGCCAGCACCAGCCACCACCACTGCACCACATGTGCCCAAGACCACAGTTTCGCTTATGAACAGACTAGGGCCCCACGCTCACAGTCCATGTGACTCTCAGCCCTGCCGACATGGAGGAACCTGTGAAGAAGACGACAATGACTTCACCTGTATCTGTCCAGCAGGACGAGGAGGAGCCGTGTGTGAGAAAGTTATAAAGTACTTCATACCATCCTTTGGTGGAAAGTCTTACATGGCGTTCCAGACCATGAAGGCCTACCATACTGTACGCATTGCCATGGAGTTCAGGGCTTCGGAAATGACTGGGATATTGCTCTACAATGGGCAAAAAAGCAAAAAGGACTTTCTTTCTCTGACTCTAGTTGAAGGATATGTGGAGCTCAGGTTTAACACTGGTTCAGGGACTGCTTCAGTTATCAGTAAAGTCCTGGTAAAGCCGGGTCGCTGGCATCAGCTTGTTGTAGTACGTAACAGGCGCAATGCCATGCTGAGCGTGGACAATGAGCCCAGCGTTGAAGGACAAAGTCCTCCAGGAACAGATGGACTCAACCTGGACACAGACCTTTTCATCGGCGGAGTGCTTGATGACATGAGTGCAGACGTAAAGGAGAGGACATCAGTTTCAGCAGGTCTGGTGGGCTGCATCCGCATGCTGGACGTGAACAACCTTGTCTATAATCTGCAAGAGAATGGCGGCAGCGTTCTGTACGGTTCGGCCATTGGCGAGTGTGGCAACAACCCATGCCTGCCAAACCCCTGCAAGAACGGAGCGTCCTGTCAGGTCAAAGAAGCCGAGATTTTCCACTGCAAATGTGTCAACGGTTTCTCTGGCCCGACCTGCGCTGATGCCCACAATCCCTGCGACCCCAATAAATGCCACCCGCCATCACGGTGCCAGGTCCTTCCAGAGGGAGGTTACAAATGCGAATGTCCGATGGGACGTGAAGGCAGGCACTGTGAAAAAGTGTCAGACAAGGGAGGCGCTTTCATTCCTTACTTCACTGGAGATTCTTTTCTGGAGCTCAAAGGCCTCCATACGTATAACCAGGATCTCAGGCAAAAATTCAGCATGACTATCGTTCTACTGGCCAATGACTCCAAAGGCATGATCTTCTACAATGGTCAGAAGACAGACGGCAAAGGGGATTTCATCTCGCTCTCTCTTAATGACGGCATCCTGGAGTTTAGATATGACCTGGGCAAAGGGCCAGCTGTCATTAGGAGTAAAGAAAAAATCAAGCTGAACGAGTGGAACACAGTGAATTTGGAACGGGCCAGCAGAAAAGGAGAGATTAGCATTAACGGCAAAGACCCTGTCAGAGGAGAGGCGCCGAATCAGCACACGGATCTCAATCTGAAGGAATCGCTCTTTGTGGGTGGAGCTCCTGATTTCCGCAAAGTAGCCAGAGCTGCTGCGATCAAAGATGGCTTCAAAGGGGCCATTCAGAAGATTACTTTGATGGGAATTCCAATCCTGAAAGCTGATAATGCCCTTTCGTCCACTGACGTGTCCATGTATCCTAATCATCCCTGCTCCAAAGACGTTTGTGAGAATGGAGGCCGCTGCAACCCCCAGCTGAACAGCTATGAGTGCGCCTGCCGCCACGGATTCTCCGGACACCACTGCCAGGACACAATATTTGAGAAGTCCGCTGGGGACACGGAGGCCATTGCGTTTGATGGTCATACATTCATCGAATATCACAACGGAGTCACCAAAAGCGAGAAAGCCCTGCTGGTGAATAAATTCGAGCTGAGCATCAGGACGGAGGCTACGCATGGTCTGATTTTGTGGAGCGGAAAGGGAGTTGAGCGCTCTGACTACATCGCCCTCGCCATTGTGGATGGAAGAGTACAGATGACCTATGACCTCGGCTCCAAGCCTGTGGTGCTGCGCTCCACTGTACGGGTCAACACCAACCACTGGATACGAATTAAGGCCAGCAGAGCGCTCAGAGATGGCTCTCTGCAGGTTGGTAATGAGGCAGCTGTCACTGGGTCTTCACCCTTGGCTGCCACACAGCTGGACACAGACGGGGCTCTCTGGTTGGGTGGACTGGAGGAGCTGTCTGTGGCTCGACGGCTGCCCAAAGCTTACAGTACAGGCTTCATTGGCTGCGTCAAAGACGTGATAGTGGACGGCGTGGAGCTGCATCTGGTGGAGGACGCCTTAAATACTCCCAAAATATCACACTGTTCTGCCAAATAA

Function

GO:

id name namespace
GO:1902572 negative regulation of serine-type peptidase activity biological_process
GO:0007213 G protein-coupled acetylcholine receptor signaling pathway biological_process
GO:0030154 cell differentiation biological_process
GO:0007275 multicellular organism development biological_process
GO:0043113 receptor clustering biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0007409 axonogenesis biological_process
GO:0007417 central nervous system development biological_process
GO:0007422 peripheral nervous system development biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0004867 serine-type endopeptidase inhibitor activity molecular_function
GO:0043236 laminin binding molecular_function

KEGG:

id description
ko04512 ECM-receptor interaction
ko00535 Proteoglycans

ZFIN:

id description
ZDB-GENE-030131-1033 Predicted to enable serine-type endopeptidase inhibitor activity. Acts upstream of or within anterior/posterior pattern specification and nervous system development. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including immature eye; nervous system; neural tube; notochord; and pronephric duct. Human ortholog(s) of this gene implicated in congenital myasthenic syndrome 8. Orthologous to human AGRN (agrin).

Ensembl:

ensembl_id ENSDART00000114067

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00043026 lncRNA upstream 234605 23249989 ~ 23251253 (+) True XLOC_021675
TCONS_00044822 lncRNA upstream 469557 22979078 ~ 23016301 (+) True XLOC_021672
TCONS_00043016 lncRNA upstream 499486 22956677 ~ 22986372 (+) False XLOC_021672
TCONS_00044821 lncRNA upstream 499486 22978964 ~ 22986372 (+) False XLOC_021672
TCONS_00043015 lncRNA upstream 500791 22953379 ~ 22985067 (+) False XLOC_021672
TCONS_00044674 lncRNA downstream 6169 23918648 ~ 23918969 (+) True XLOC_021678
TCONS_00044823 lncRNA downstream 110976 24023455 ~ 24071239 (+) True XLOC_021679
TCONS_00043035 lncRNA downstream 175626 24088105 ~ 24091922 (+) True XLOC_021684
TCONS_00044824 lncRNA downstream 221302 24133781 ~ 24140410 (+) True XLOC_021686
TCONS_00044825 lncRNA downstream 570833 24483312 ~ 24492037 (+) False XLOC_021689
TCONS_00043024 mRNA upstream 233190 23232136 ~ 23252668 (+) False XLOC_021675
TCONS_00043025 mRNA upstream 233473 23232213 ~ 23252385 (+) False XLOC_021675
TCONS_00043021 mRNA upstream 271259 23182037 ~ 23214599 (+) False XLOC_021674
TCONS_00043023 mRNA upstream 273391 23187442 ~ 23212467 (+) True XLOC_021674
TCONS_00043022 mRNA upstream 293342 23183449 ~ 23192516 (+) False XLOC_021674
TCONS_00043029 mRNA downstream 5942 23918421 ~ 23995856 (+) True XLOC_021677
TCONS_00043034 mRNA downstream 173052 24085531 ~ 24113207 (+) False XLOC_021684
TCONS_00043036 mRNA downstream 212205 24124684 ~ 24131962 (+) True XLOC_021685
TCONS_00043038 mRNA downstream 359942 24272421 ~ 24291927 (+) True XLOC_021688
TCONS_00043040 mRNA downstream 589439 24501918 ~ 24508821 (+) False XLOC_021690
TCONS_00043017 other upstream 436718 23020709 ~ 23049140 (+) False XLOC_021673
TCONS_00043003 other upstream 894703 22591058 ~ 22591155 (+) True XLOC_021666
TCONS_00042986 other upstream 1862009 21623735 ~ 21623849 (+) True XLOC_021656
TCONS_00042958 other upstream 2371126 21067389 ~ 21114732 (+) False XLOC_021644
TCONS_00042937 other upstream 3013988 20471755 ~ 20471870 (+) True XLOC_021632
TCONS_00043030 other downstream 159550 24072029 ~ 24072110 (+) True XLOC_021680
TCONS_00043031 other downstream 159681 24072160 ~ 24072245 (+) True XLOC_021681
TCONS_00043032 other downstream 161336 24073815 ~ 24073896 (+) True XLOC_021682
TCONS_00043033 other downstream 161604 24074083 ~ 24074155 (+) True XLOC_021683
TCONS_00043037 other downstream 235576 24148055 ~ 24148771 (+) True XLOC_021687

Expression Profile

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