RNA id: TCONS_00043035


Basic Information

Item Value
RNA id TCONS_00043035
length 769
lncRNA type retained_intron
GC content 0.46
exon number 5
gene id XLOC_021684
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 24085531 ~ 24113207 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GACGGGGCACACAGCAGACGATGGACGACCAGGGCCAGTCAGATGAGAAGAAGAAGAGCAGCCTATTTAGTGATGAGCTTCAGGTCATGGAGATACGACATGAACATGGAACTGAAATCCAGAGGGAGAAGAACAAGGAGACCCGGAGGAGGAGAAGGGTCAAACCTACAGATGGAACACTACCAGTGAGCATCTCAGTTGTTGAGAAGGACATAGACAGGCGTCCTGAAGAGCCACGGGGCCCTGGACCCTTCTTCTTTTTTGGTGGAAAAAATGGGGCCTCCATAGTTGTTTCATATTGTGAGAGTCGAGGCTGGCAGCGCATTTATGACAAGACCAGGACGGACTACAAGCTCAAGTGGTGTGAAACTAAATCACCTGCTACCTACTACCGCTTCAGAGCAGGTGAACCTTTGAATATGTCAACTAAACAGCAGTCATGAAAAAACCTTCTTCacttttgtctgtttatttttatacaggTTACCAGTTGCTTTACCAGATACCAAACAATAAGGTCTTGACCACTAAGATAGGCCTTCTGAACAGCCTGCGGGAATACGACAGAGTCAGCAGTAAGATCAACTATGGACATGGAAACAGGAGAATGAAGCTTGAAGATTTTTGCCCGATTACTTTCCGTATGGATATGAAAGATGAGAGAGAGGCATTTTTTAATGAATCAAGCAGTGATAAATACAGCATGTGGATCTGCAAGCCAACCGGTCTAAACCAGGGCCGTGGTATTTTTCTTCTGCGACCAGAAGAC

Function

GO:

id name namespace
GO:0006464 cellular protein modification process biological_process

KEGG:

id description
ko04812 Cytoskeleton proteins

ZFIN:

id description
ZDB-GENE-081104-350 Predicted to act upstream of or within cellular protein modification process. Is expressed in central nervous system and polster. Orthologous to human TTLL10 (tubulin tyrosine ligase like 10).

Ensembl:

ensembl_id ENSDART00000145159

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044823 lncRNA upstream 16866 24023455 ~ 24071239 (+) True XLOC_021679
TCONS_00044674 lncRNA upstream 169136 23918648 ~ 23918969 (+) True XLOC_021678
TCONS_00043026 lncRNA upstream 836852 23249989 ~ 23251253 (+) True XLOC_021675
TCONS_00044822 lncRNA upstream 1071804 22979078 ~ 23016301 (+) True XLOC_021672
TCONS_00044821 lncRNA upstream 1101733 22978964 ~ 22986372 (+) False XLOC_021672
TCONS_00044824 lncRNA downstream 41859 24133781 ~ 24140410 (+) True XLOC_021686
TCONS_00044825 lncRNA downstream 391390 24483312 ~ 24492037 (+) False XLOC_021689
TCONS_00044826 lncRNA downstream 391591 24483513 ~ 24492037 (+) False XLOC_021689
TCONS_00043039 lncRNA downstream 393551 24485473 ~ 24485831 (+) True XLOC_021689
TCONS_00043046 lncRNA downstream 507099 24599021 ~ 24601238 (+) False XLOC_021693
TCONS_00043029 mRNA upstream 92249 23918421 ~ 23995856 (+) True XLOC_021677
TCONS_00043028 mRNA upstream 173418 23658474 ~ 23914687 (+) True XLOC_021676
TCONS_00043027 mRNA upstream 175626 23485858 ~ 23912479 (+) False XLOC_021676
TCONS_00043024 mRNA upstream 835437 23232136 ~ 23252668 (+) False XLOC_021675
TCONS_00043036 mRNA downstream 32762 24124684 ~ 24131962 (+) True XLOC_021685
TCONS_00043038 mRNA downstream 180499 24272421 ~ 24291927 (+) True XLOC_021688
TCONS_00043040 mRNA downstream 409996 24501918 ~ 24508821 (+) False XLOC_021690
TCONS_00043043 mRNA downstream 497711 24589633 ~ 24598877 (+) True XLOC_021692
TCONS_00043044 mRNA downstream 506988 24598910 ~ 24606773 (+) False XLOC_021693
TCONS_00043033 other upstream 13950 24074083 ~ 24074155 (+) True XLOC_021683
TCONS_00043032 other upstream 14209 24073815 ~ 24073896 (+) True XLOC_021682
TCONS_00043031 other upstream 15860 24072160 ~ 24072245 (+) True XLOC_021681
TCONS_00043030 other upstream 15995 24072029 ~ 24072110 (+) True XLOC_021680
TCONS_00043017 other upstream 1038965 23020709 ~ 23049140 (+) False XLOC_021673
TCONS_00043037 other downstream 56133 24148055 ~ 24148771 (+) True XLOC_021687
TCONS_00043041 other downstream 410043 24501965 ~ 24507281 (+) True XLOC_021690
TCONS_00043042 other downstream 464533 24556455 ~ 24560873 (+) True XLOC_021691
TCONS_00043045 other downstream 507075 24598997 ~ 24604418 (+) False XLOC_021693
TCONS_00043051 other downstream 514315 24606237 ~ 24606374 (+) False XLOC_021693

Expression Profile

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