RNA id: TCONS_00043029


Basic Information

Item Value
RNA id TCONS_00043029
length 3241
RNA type mRNA
GC content 0.45
exon number 16
gene id XLOC_021677
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 23918421 ~ 23995856 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGTCCTAGcggtgctcacacacacacaaacacgcacgcacacacacgcacgcacacacacatctgacAGCTCTCAGGACGGCCATGACGTCTCGAAGGTGGTTTCATCCCAACATCACTGGGATCGAGGCAGAACACCTCCTCCTGACACGGGGCGTCCATGGCAGCTTTCTAGCACGACCCAGCAAGAGCAACCCAGGAGATTTCACTCTGTCTGTCAGGAGGAATGATGAGGTCACCCACATTAAAATCCAGAACTCGGGGGACTATTATGACCTGTACGGAGGGGAGAAGTTCGCCACGCTGGCTGAGCTGGTCCAGTATTACACCGAGCAGCACGACCTCCTGAGGGAACGCAATGGAGATGTTATTGAGCTCAAATACCCACTCAACTGCAAAGACCCCACATCTGAGAGGTGGTATCATGGACATCTCTCAGGAAGAGACGCTGAAAAGCTCCTTACAGAGAAGGGTAAATCCGGAAGCTTCCTGGTGAGAGAGAGTCAAAGTAAACCTGGGGACTTTGTGCTTTCTGTCCTCACTAATGAAGAAAAGCATGAAAATGTAGACCGCAAGACTAAAGTCACACATGTCATGATCCGTTATCAGGATGGAAAATATGATGTAGGAGGAGGGGAGAGGTTTGACACCTTAGCAGATTTAGTAGAGCATTATAAGAAAAACCCCATGGTCGAGAAGAGTGGAATTGTTGTGCACCTTAAACAGCCATTCAATGCCACGAGGATAAATGCTGCAAACATTGAGAACAGGGTACACGAACTAAATAAAGTTGCCGACAACTCCGAGAAACCCAAGCAAGGCTTCTGGGAAGAATTTGAGGTTTTACAGCAACAAGAATGTAAACTCCTTTACCCCAGGAAAGAGGGGCAGAGaccagaaaataaaaacaagaacagaTATAAGAATATACTACCATTTGACACCACTCGAGTGCAGATCAAGGAAGCGGATCCTGATGTTCCCGGATCCGATTACATCAACGCTAACTATATCCGAAGCGTGAATGAAGAAGGACGTCATATGGATGAAGGTAAAGTGTTCATCGCTACTCAGGGCTGCCTTCAGAACACAGTCCTGGACTTCTGGAAAATGGTTTATCAGGAAAATACACATGTTATTGTCATGACAACCAAGGAGATGGAGAGAGGACGGAATAAATGTGTGCGGTACTGGCCAGACTTGAATTCAACAAAGGAGTTTGGGAAGGTGTGTGTGAAGAACATTGAGGAACACACAGCTCAGGACTACATACGGCGAGAGCTTGAAGTCACACGTCTAGACAGGAGAGAGCCTCCCAGGTGTATCTGGCACTATCAGTACCTGAGTTGGCCTGATCACGGTGTTCCAAATGAACCTGGAGGAGTGTTGAGCTTCCTGGAGCAAGTGAACCGAACCCAGAGCGCCATTCCAGAGAGCGGACCCATAGTGGTTCACTGCAGTGCAGGGATTGGAAGAACAGGCACAATTATCGTGATTGACATTCTTATCGACATCATAAATAGACAAGGGCTGGACTGTGACATTGACATCCCAAAAACGATTCAGAGAGTGCGACAGCAGCGGTCCGGTATGGTTCAGACTGAAGCCCAGTACAAGTTCATCTACATGGCTGTTCAGCAATACATTGATACTGCTCAGAAGAGACTAGAAGAGGAGCAGAGGAACAAAACGAAGGAGAGGGAATACTCTAACATCAAGTACCCACAGATGTCAAATGCCAGAGCCAAGCCTAACATGAGCTCGTCTCGCTCTTCATCTGTAATGAATGACGACTCCAGTGTGTATGAGAATCTGAACATCAAAAATCCAAAGGGCTCCACCAGCAGTAACACCAGGAGATAAGCCACGGGCTGCTGTCTCAGGGACTCTGGGATTCCAGCAGAGATGCTGTTCAGAAGCACTAGATCATGGAACGACACTGGATCAAGCCACTGGGGGGTGGGGGACCAGCAGCACCAACCCTGAGGTGACGCTGTTTTGGCTGGAGGTTTACAGAGATCTCCAACAGCTCATTTCCTGACTGAAAAACCACACTCCAAAACTAAGTGCCTGATCAGCAGCCGAAATTGTTCCCGCTATGGATGTGTGTCTCTCGGTGCTTTCTCTCCCCACTTCTAGTCTAGCAAGCCTGCACTAAGCTACATGATGGTTTGTATATGTGTGAAGTATATATGAAATATGAATATTTACACTCAGCGACGTAACTTTGGATGAAGCTACGCTCTTTCCATGCTGTCTACGGCTCTTTCCAAGACCTTGCTTTGTCTACTGGATGTCGTCTACCGTAACCAAAGacctttaatatttatatatctcAGTATCTCGCAAGCAGCAGTCATTCGCGCTCTGCTTAATGATGCTTGCGGTTGTTTTAAGAAGAAAAGTACACTTCCTGAGCCTCAAGAATCCTGGTTTTCTTTTCAGGGGAGTTGATTGGTCAGACATCGACCAATGTATTGGATACCCTGTAAGTAGGTGTTTTTTAAATGGACTGATTCGGTACAGTTTGGTAGAATATTTACAGTATGTGCCAATTAGCAGCCTGTACGTCATACTTGTGAAAGCTTGTGCTTTTGATGCTGTTTTATTGAGCATTACCTCTAGGCTAACCAACAGTCAAGTGCTACTGTCAATCAAAGGCTTATCAACCAATCAGGCTGCCTCTTCATCAGTAAGCTCCTCCCTCTGTGAATAGGCTTGATTTGTTCTGAAAACATCAGGTGAGCCTTTTTTTagattcatttttgttttgttaatagtCATTTCGTTTGCAACTATGATTCCTTTAGAGCAGTTTTATTTTCTGTGgtgatgtttgtgaatgtgaTTATGAAATCTGGGCCTGGCGTTTTTTATGTAATGCATTTCTTTTTATGTCTTTGACTGTATTATTCCACATTTCCTCTGAGGAGACTCATTAAGCTCTTTTATCACATGTCAACAGGGTATGTGTGTATTGCAGTGTTATAAATAGCCCGTTAAAGCTTTTTTTTACGTCAATAGGGGATTGTGATTGCACTGAGGAGGCCTTTGAATGAAATAACGTAAAATGAAAACGTGGTATTACTAGACATTTACAAAGGAGGGGCAAATGTCAGGATGTCAGCTGAGCCATTGACGTGAACAGGATTTCGGTAGAGACTACAGCTAAAAATGAGGCAGGCCAGATGGCCCTCGGCGAAGATTAAAGAGTAGATTTgtgttgagcaaaaaaaaaaaaa

Function

GO:

id name namespace
GO:0000165 MAPK cascade biological_process
GO:0006470 protein dephosphorylation biological_process
GO:0008283 cell population proliferation biological_process
GO:0016311 dephosphorylation biological_process
GO:0048703 embryonic viscerocranium morphogenesis biological_process
GO:0005737 cytoplasm cellular_component
GO:0016787 hydrolase activity molecular_function
GO:0016791 phosphatase activity molecular_function
GO:0004721 phosphoprotein phosphatase activity molecular_function
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1158 Enables phosphatase activity. Acts upstream of or within embryonic viscerocranium morphogenesis. Predicted to be located in cytoplasm. Is expressed in head. Human ortholog(s) of this gene implicated in several diseases, including Noonan syndrome (multiple); Noonan syndrome with multiple lentigines 1; atrophic gastritis; juvenile myelomonocytic leukemia; and metachondromatosis. Orthologous to human PTPN11 (protein tyrosine phosphatase non-receptor type 11).

Ensembl:

ensembl_id ENSDART00000046951

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00043026 lncRNA upstream 667168 23249989 ~ 23251253 (+) True XLOC_021675
TCONS_00044822 lncRNA upstream 902120 22979078 ~ 23016301 (+) True XLOC_021672
TCONS_00043016 lncRNA upstream 932049 22956677 ~ 22986372 (+) False XLOC_021672
TCONS_00044823 lncRNA downstream 27599 24023455 ~ 24071239 (+) True XLOC_021679
TCONS_00043035 lncRNA downstream 92249 24088105 ~ 24091922 (+) True XLOC_021684
TCONS_00044824 lncRNA downstream 137925 24133781 ~ 24140410 (+) True XLOC_021686
TCONS_00044825 lncRNA downstream 487456 24483312 ~ 24492037 (+) False XLOC_021689
TCONS_00044826 lncRNA downstream 487657 24483513 ~ 24492037 (+) False XLOC_021689
TCONS_00043028 mRNA upstream 3734 23658474 ~ 23914687 (+) True XLOC_021676
TCONS_00043027 mRNA upstream 5942 23485858 ~ 23912479 (+) False XLOC_021676
TCONS_00043024 mRNA upstream 665753 23232136 ~ 23252668 (+) False XLOC_021675
TCONS_00043025 mRNA upstream 666036 23232213 ~ 23252385 (+) False XLOC_021675
TCONS_00043021 mRNA upstream 703822 23182037 ~ 23214599 (+) False XLOC_021674
TCONS_00043034 mRNA downstream 89675 24085531 ~ 24113207 (+) False XLOC_021684
TCONS_00043036 mRNA downstream 128828 24124684 ~ 24131962 (+) True XLOC_021685
TCONS_00043038 mRNA downstream 276565 24272421 ~ 24291927 (+) True XLOC_021688
TCONS_00043040 mRNA downstream 506062 24501918 ~ 24508821 (+) False XLOC_021690
TCONS_00043043 mRNA downstream 593777 24589633 ~ 24598877 (+) True XLOC_021692
TCONS_00043017 other upstream 869281 23020709 ~ 23049140 (+) False XLOC_021673
TCONS_00043003 other upstream 1327266 22591058 ~ 22591155 (+) True XLOC_021666
TCONS_00042986 other upstream 2294572 21623735 ~ 21623849 (+) True XLOC_021656
TCONS_00042958 other upstream 2803689 21067389 ~ 21114732 (+) False XLOC_021644
TCONS_00042937 other upstream 3446551 20471755 ~ 20471870 (+) True XLOC_021632
TCONS_00043030 other downstream 76173 24072029 ~ 24072110 (+) True XLOC_021680
TCONS_00043031 other downstream 76304 24072160 ~ 24072245 (+) True XLOC_021681
TCONS_00043032 other downstream 77959 24073815 ~ 24073896 (+) True XLOC_021682
TCONS_00043033 other downstream 78227 24074083 ~ 24074155 (+) True XLOC_021683
TCONS_00043037 other downstream 152199 24148055 ~ 24148771 (+) True XLOC_021687

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000001_08365139_08380569.mRNA True 3045 mRNA 0.42 17 CI01000001 8364229 ~ 8380694 (+)
bowfin (Amia calva) AMCG00017860 True 2675 mRNA 0.49 13 CM030131.1 25924661 ~ 25945888 (+)