RNA id: TCONS_00043281


Basic Information

Item Value
RNA id TCONS_00043281
length 1322
RNA type mRNA
GC content 0.46
exon number 8
gene id XLOC_021830
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 33963619 ~ 33976116 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGTCAGGCGGCTGGTGTATGCGCGCACTCTGGCTATGTGGAGAGTAGTGATGATGTCGGAGGAGGTTGGTAAGAAAGTGCAGGCGGTGGTGGAGCGGGTGAATCAAGCGGTTTCCCGACGCCCGAAGACGTTACCATGTATACCCCCACGACTGGTTGCAGTTAGTAAGACGAAACCACCAGAAATGGTGGTGGAGGCTTACAAACATGGACAGCGAAACTTTGGAGAGAATTACGTAAATGAACTTGTTGAGAAAGCGTCCAATCCCCAGATTTTGTCATCATGTCCTGAAATAAAGTGGCATTTCATTGGTCATCTGCAAAAGGGTAACGTCAACAAACTCCTGGGTGTCCCAAACCTGTATATGGTAGAGACGATTGACTCTGTGAAACTGGCAGAAAAAGTCAACAGCTCATGGCAAAAACTGAGAGCGGCCAACACACACAGGTTAAAGATTATGGTTCAGATCAACACCAGCGGAGAGGACAGTAAACATGGCCTGCCACCTGATGAGACCGTAAACATGGTAAAACATGTTGTATCTCAGTGTCCAGCGCTTGATCTCGCCGGGCTCATGACGATTGGCCGTTACGGTTATGACCTCAACGATGGCCCCAATCCTGATTTCCAGCTGCTGTTAAAATGTCGTGTTGAAGTTTGCGAGAGTCTGAAGATCCCATTGGAGCAGGTTGAGCTCAGCATGGGCATGTCTACTGACTTTGAACATGCGATCGAGGTTGGATCCACCAACATACGTGTTGGCAGCACCATTTTCGGCACTCGCGAATATCCCAACACTCCAAGCCCCAGCCCGGAGAAAAAGCCAAAGGTTGTATGTGAGGAAGCGGCTAGAAAAATGGACCGGCTTACCGTCACAGAGCAATGAACGATGGGGAAAAGCAGGTTAATTGAACAAATAATGGGACTTCTTGGGTTTCTTCCCAATGACTGGGCTCACCATTCACCAGTCAAGGGCCTTTAATAAGTCTTAAATAACGCTACCGACCTTCTGTGGCAAGAAAGAAGCGCAATTTATTAACTGGAATACTAAATTTGCTTCCTGAAGGTGTTTTTATTGTCGAAAGATCTCCAGAAGTGTCCTCCAGCCCTGTGTAAAATACTTGTGGGATTTGCTAAGGTTTTGTTTTCTAACAGATACAGGGTCAGCACATGCTTCGTTTCGTTGTGCCAATCGTAGATGTGAAGTATCATTTCTGTCATTTTCATTTGGATTAGACGACGCTTGTGGCCCATTTGAACCTTTAAGTGAAACTATAGGGTGTACTGTTTTGTTCCTAGAAGTGTGTAGGTATATTTTATAG

Function

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component
GO:0030170 pyridoxal phosphate binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-1378 Predicted to enable pyridoxal phosphate binding activity. Human ortholog(s) of this gene implicated in early-onset vitamin B6-dependent epilepsy. Orthologous to human PLPBP (pyridoxal phosphate binding protein).

Ensembl:

ensembl_id ENSDART00000140666

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044857 lncRNA upstream 504354 33455563 ~ 33459265 (+) True XLOC_021820
TCONS_00044856 lncRNA upstream 1384185 32577050 ~ 32579434 (+) True XLOC_021815
TCONS_00044677 lncRNA upstream 1400805 32562610 ~ 32562814 (+) True XLOC_021814
TCONS_00044855 lncRNA upstream 1475893 32480330 ~ 32487726 (+) True XLOC_021812
TCONS_00043257 lncRNA upstream 1553692 32406356 ~ 32409927 (+) False XLOC_021810
TCONS_00043283 lncRNA downstream 3555 33978711 ~ 33983432 (+) True XLOC_021831
TCONS_00043285 lncRNA downstream 12299 33987455 ~ 33991280 (+) False XLOC_021832
TCONS_00043291 lncRNA downstream 64238 34039394 ~ 34043302 (+) True XLOC_021834
TCONS_00044859 lncRNA downstream 72260 34047416 ~ 34185014 (+) False XLOC_021835
TCONS_00044858 lncRNA downstream 72260 34047416 ~ 34185014 (+) False XLOC_021835
TCONS_00043280 mRNA upstream 1630 33957350 ~ 33961989 (+) True XLOC_021829
TCONS_00043279 mRNA upstream 10513 33947874 ~ 33953106 (+) True XLOC_021828
TCONS_00043278 mRNA upstream 11788 33934228 ~ 33951831 (+) False XLOC_021828
TCONS_00043277 mRNA upstream 35303 33907899 ~ 33928316 (+) True XLOC_021827
TCONS_00043275 mRNA upstream 62282 33777519 ~ 33901337 (+) True XLOC_021825
TCONS_00043284 mRNA downstream 12226 33987382 ~ 34005296 (+) False XLOC_021832
TCONS_00043286 mRNA downstream 16353 33991509 ~ 34005304 (+) False XLOC_021832
TCONS_00043287 mRNA downstream 26647 34001803 ~ 34023632 (+) False XLOC_021832
TCONS_00043289 mRNA downstream 30636 34005792 ~ 34023346 (+) True XLOC_021832
TCONS_00043290 mRNA downstream 55394 34030550 ~ 34043651 (+) False XLOC_021834
TCONS_00043276 other upstream 133429 33828665 ~ 33830190 (+) True XLOC_021826
TCONS_00043274 other upstream 202954 33759747 ~ 33760665 (+) True XLOC_021824
TCONS_00043271 other upstream 425450 33538051 ~ 33538169 (+) True XLOC_021821
TCONS_00043268 other upstream 542779 33381154 ~ 33420840 (+) False XLOC_021819
TCONS_00043266 other upstream 654034 33294633 ~ 33309585 (+) False XLOC_021818
TCONS_00043288 other downstream 27601 34002757 ~ 34002873 (+) True XLOC_021833
TCONS_00043293 other downstream 72260 34047416 ~ 34053709 (+) False XLOC_021835
TCONS_00043296 other downstream 72407 34047563 ~ 34185009 (+) False XLOC_021835
TCONS_00043297 other downstream 78350 34053506 ~ 34185014 (+) True XLOC_021835
TCONS_00043302 other downstream 1427541 35402697 ~ 35461009 (+) False XLOC_021842

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000001_03489900_03496853.mRNA True 1893 mRNA 0.42 8 CI01000001 3488886 ~ 3496853 (-)