Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00044198 |
| length | 6814 |
| RNA type | mRNA |
| GC content | 0.47 |
| exon number | 27 |
| gene id | XLOC_022401 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007134.7 |
| NCBI id | CM002907.2 |
| chromosome length | 46223584 |
| location | 27251626 ~ 27345425 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0019228 | neuronal action potential | biological_process |
| GO:0034765 | regulation of ion transmembrane transport | biological_process |
| GO:0055085 | transmembrane transport | biological_process |
| GO:0007638 | mechanosensory behavior | biological_process |
| GO:0086010 | membrane depolarization during action potential | biological_process |
| GO:0006811 | ion transport | biological_process |
| GO:0008045 | motor neuron axon guidance | biological_process |
| GO:0006814 | sodium ion transport | biological_process |
| GO:0008345 | larval locomotory behavior | biological_process |
| GO:0035725 | sodium ion transmembrane transport | biological_process |
| GO:0030424 | axon | cellular_component |
| GO:0001518 | voltage-gated sodium channel complex | cellular_component |
| GO:0005886 | plasma membrane | cellular_component |
| GO:0005887 | integral component of plasma membrane | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0005216 | ion channel activity | molecular_function |
| GO:0005244 | voltage-gated ion channel activity | molecular_function |
| GO:0005248 | voltage-gated sodium channel activity | molecular_function |
| GO:0005261 | cation channel activity | molecular_function |
| GO:0005272 | sodium channel activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-000828-1 | Enables voltage-gated sodium channel activity. Acts upstream of or within several processes, including mechanosensory behavior; motor neuron axon guidance; and sodium ion transmembrane transport. Predicted to be integral component of plasma membrane. Predicted to be part of voltage-gated sodium channel complex. Predicted to be active in axon. Is expressed in heart; nervous system; otic vesicle; and trigeminal placode. Human ortholog(s) of this gene implicated in benign familial neonatal epilepsy and developmental and epileptic encephalopathy 13. Orthologous to human SCN8A (sodium voltage-gated channel alpha subunit 8). |
| ensembl_id | ENSDART00000022042 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00045021 | lncRNA | downstream | 6391 | 27233879 ~ 27245235 (-) | True | XLOC_022399 |
| TCONS_00044738 | lncRNA | downstream | 52531 | 27191956 ~ 27199095 (-) | True | XLOC_022400 |
| TCONS_00044194 | lncRNA | downstream | 128503 | 27113460 ~ 27123123 (-) | True | XLOC_022398 |
| TCONS_00045020 | lncRNA | downstream | 284221 | 26961010 ~ 26967405 (-) | False | XLOC_022396 |
| TCONS_00044737 | lncRNA | downstream | 492066 | 26749873 ~ 26759560 (-) | True | XLOC_022393 |
| TCONS_00044209 | lncRNA | upstream | 210424 | 27555849 ~ 27558715 (-) | True | XLOC_022406 |
| TCONS_00045022 | lncRNA | upstream | 307471 | 27652896 ~ 27675394 (-) | True | XLOC_022412 |
| TCONS_00044220 | lncRNA | upstream | 343206 | 27688631 ~ 27695173 (-) | False | XLOC_022413 |
| TCONS_00045024 | lncRNA | upstream | 381870 | 27727295 ~ 27729454 (-) | False | XLOC_022415 |
| TCONS_00045023 | lncRNA | upstream | 381870 | 27727295 ~ 27729454 (-) | True | XLOC_022415 |
| TCONS_00044195 | mRNA | downstream | 16223 | 27134942 ~ 27235403 (-) | False | XLOC_022399 |
| TCONS_00044196 | mRNA | downstream | 98760 | 27136612 ~ 27152866 (-) | False | XLOC_022399 |
| TCONS_00044193 | mRNA | downstream | 128446 | 27101650 ~ 27123180 (-) | False | XLOC_022398 |
| TCONS_00044191 | mRNA | downstream | 128455 | 27078866 ~ 27123171 (-) | False | XLOC_022398 |
| TCONS_00044192 | mRNA | downstream | 150026 | 27079113 ~ 27101600 (-) | False | XLOC_022398 |
| TCONS_00044200 | mRNA | upstream | 13297 | 27358722 ~ 27442544 (-) | True | XLOC_022402 |
| TCONS_00044201 | mRNA | upstream | 101504 | 27446929 ~ 27479558 (-) | True | XLOC_022403 |
| TCONS_00044202 | mRNA | upstream | 149666 | 27495091 ~ 27501923 (-) | False | XLOC_022404 |
| TCONS_00044203 | mRNA | upstream | 152532 | 27497957 ~ 27505925 (-) | False | XLOC_022404 |
| TCONS_00044204 | mRNA | upstream | 153675 | 27499100 ~ 27505825 (-) | False | XLOC_022404 |
| TCONS_00044197 | other | downstream | 15972 | 27206719 ~ 27235654 (-) | False | XLOC_022399 |
| TCONS_00044183 | other | downstream | 429858 | 26819114 ~ 26821768 (-) | True | XLOC_022395 |
| TCONS_00044178 | other | downstream | 575856 | 26675652 ~ 26675770 (-) | True | XLOC_022392 |
| TCONS_00044148 | other | downstream | 1458645 | 25789132 ~ 25792981 (-) | False | XLOC_022380 |
| TCONS_00044132 | other | downstream | 2325278 | 24880227 ~ 24926348 (-) | True | XLOC_022370 |
| TCONS_00044212 | other | upstream | 234739 | 27580164 ~ 27580292 (-) | True | XLOC_022408 |
| TCONS_00044226 | other | upstream | 463643 | 27809068 ~ 27822778 (-) | True | XLOC_022418 |
| TCONS_00044236 | other | upstream | 845104 | 28190529 ~ 28222959 (-) | False | XLOC_022424 |
| TCONS_00044238 | other | upstream | 855535 | 28200960 ~ 28223243 (-) | True | XLOC_022424 |
| TCONS_00044248 | other | upstream | 1840427 | 29185852 ~ 29257404 (-) | False | XLOC_022432 |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| grasscarp (Ctenopharyngodon idella) | CI01000001_10259586_10315835.mRNA | True | 6864 | mRNA | 0.48 | 26 | CI01000001 | 10258768 ~ 10315905 (-) |
