RNA id: TCONS_00044202


Basic Information

Item Value
RNA id TCONS_00044202
length 4698
RNA type mRNA
GC content 0.38
exon number 3
gene id XLOC_022404
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 27495091 ~ 27506161 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGAGCTCTACTATGTGGTACATCATGCAGAGTATTCAGAGCAAATACTCCTTGTCCGAGCGGCTCATTCGAACCATAGCAGCCATTCGCTCCTTCCCTCATGATAATGTAGAAGACCTTATACGCCGGggggCAGATGTGAACCGGATGCATGGAACACTGAAGCCGCTGCACTGCGCTTGTATGGTGGCCGATGCCGATTGTGTGGAGCTTCTGCTGGAGAAAGGTGCTGAGGTAAACGCCTTGGACGGCTACAACCGCACCGCCCTTCATTACGCAGCAGAGAAAGACGAGGGTTGTGTGGAGCTGCTTCTGGAGTACGGTGCCCACCCAAATGCGCTGGACGGCAACAAGGACACCCCTCTGCACTGGGCCGCCTTCAAAGATAACCCAGAGTGTGTACGGGCCCTTTTAGAAAGCGGCGCCTGCCCGAACGTCCGCGATTACAACAACGACACACCTCTCAGCTGGGCAGCGATGAAGGGAAACCTAGAGAGCGTTCGTGTGCTCCTGGAATACGGCGCTCTGGTTCACGTCACCAACTTAAAGGGCCAGACGCCCATCTCGCGGCTGGTGGCTCTGCTGGCTCGCGGTTTGGGCACGGAACAGGAGGAGGAGTGTCTGGATCTGTTGTGCCGTGCTGCTGGGAGGTTCGAGATCCGCAGAGCCGATGGCTCATTACCTCGTGAGCTCAGTAAAGATCCTCAATTACTGGCCCGACTCACTAGCCTGGTAGCCCAGCCACCTTCATTGCGAGCCTTGGCCCGTTGTGCTGTCCGCAGCAGCTTAGGAGTGCAGTATCTCCCGTCTGCTGTCAAACAGCTTCCCTTACCAGAGTCTGTTAAAGAATATGTGCTCCTGAGAGACTGAGACGTGAATTAGGCATAGATGTTTTCCATGTATGTGAACATGTGATTGTAAACCGGACTCTGAGCTGAAATCTGGTTGTCTATATAGGAGACAGTGGGTAAACATGTCAGGAAGTGGcccgtttttttattatttgctataaTAATGTCATCAAACTAATTCAGAATTGGGTTTGTGTGGAGAAATGTCGGTGTGTTCGGCGAGAGGATTAATAATCAGCTTAATACAGCAGGTGATGATCATATATGAAACACTCTAATCGCAAAAAGATGGAAATCATTAACACTTTAATAGCACTTAAGTTATAATCGTCATGTATTAAATTTGTGTTTCATActactttgtttaatttttatttatgccGGAGGATTTGGTGGTTTTACACTTGATAACCGAAGCCTTTAGATTAAGTTTTAAACTCAAATAAATatctacttttttttgtttgtgttaagtCATTTTATAAGTTAAACTTTTTAAGTTAAAACTGAGCAacatcattttacatttatttactttttaagcagatttcaaaacaacatattATTTTTTGGCCATCAATCACaatcattattataaatattgctcaTGTAAACAACTTTACTACCTGATTTAGAGTGTTGGATTgcattacttttgttttgtttggtgctGATGACTTGCAGATGAGCTCTGCTTTTACGTTTGAGGTGAAAACATAAATCGTCTGTGTCAATATTGggattgttcattttatttactatGTCATGTTAGCATGATCATTCCAGATATTGGCAGACCGTATATAGGATGTCTTAAATTAATACAGGTCAACTTGTGTCACATCCTGTGAACCCCAAGAGATTTTTCGCAGCTGTTCtttctgttttcttttctctGTTGTTCTATTGCTAAGACGTATGTAGTGCTTACATCTAGTTTCATGCATGCAGACTAACCAGTAAAAGCCTCCATGCATTGTTCAagtgttttactgcagttatttccttaaaaaaataGAAGTGAATGTTTAAGTGCACATGTAATTGCTTCACCACTAACATAAAAACTTTATACGAGCTTTGTGTTTATAATTGTAACCAGTAGAGGGCACCAGAATACAACTTGATTGAAATCAGTCAGATAAAGCTAAAGAAATATGCCTTGtttgtaaaattaaaacaataaaacaacattcTAATTTTACATGAAAGAAAAAGACTGTCTTTCAGGAAATATGTCAGCTTAATCTGTTTTAATTACCTTTATTTACTAAAGTGTTGTTTAGCTTTATTTACTTAGACGTATTATTAACAGTGAAAAGATTTTCTGCATAGTACTATCACTTTAAAGCATGTTTTTTGGTTTCCCAATAGGCAATATAATAATGAGGAAAGCATATTTTTATTGTGAATTAACATTTCAGTTAGGACTGTTTGCATTTTCCATCATGCTTTATTTAAACTTCTGTCCAAGCACAGGATGTCCTCCTCAAAAGAATGTAAATCAGTCAGGAAGGAAACTACAGTAGGACTGAATAAAGGCCCTCTGCAGGCTGGTCTTCCTCTCCTTCAAAGCCTTAAacctttagtttagtttagattaCCTTTAGTTTTATTGATAACAAAATGGCTATTTTAAACTCAATAGTAGAGGATTAGATAAGAGAGTCTGCAGTTCAGAGATGGCAACAAAATAATGTTCATGACAGTTTTAGGGTTTGAATAATAATACTAGTatccataataataatcatataaatatgtaatacAACAAATGTGGATGCTATGGAGATACTTTCACTTTTTGTTACTAAAACtgggaatataatataatagtgataataaataaaaacagaacacAATGAAATGAGGATTctaaacatatatttcaaattttacaaaactacattaaatatattaaattagtttgtttaattaagttttaccattttaaatgcatttaaattaagttagagcttaatataaaattatttttataatattaatatattaatccccgtgttggcgtgggtttcctctggtttcccccacagtccaaagacatgcgctacaggtgaactgaacaaactaaataggccatagtgtatgagtgtgtatggatgttttaccagtactgggttgtggctggaagggcatttgctatgTAAAGttagcatatgctggataagttggtggttcattccgctgtggcaacccctgattaagggaccaagccaaagggaaattcatgaatgaataatagtgataataatcataataaataaataaaaacagagcaCAGTGTAATGAGAATACtagatatatattttacttttagtTACAAACTAACTACATGAACTAATTATATTGAACTATTTTAAGTTgaattaatttttacaattttaaatacattttaaattctgtTAGAGCGCGTtatgtttataatatattattttatattatttattcatgttttaattccatatcagcagcattggctatattcaagGAAAAACCTATACCaaatatacagtattattattttataatatagctATTTTATCATCTCTGATTGAAACCCCCCGAGAAGTGTAATAATTGGCTTAAAAGATTTTCTGAAAAGACTGGAAGGAACAAAAATAAGTTTGCATTTAGCTCTCGAAATACAGATAGTATTAAGCCATTTTATATTACTGAACAGATTCACATTAACGTTTAAATGACTTAACAAAACTTTAACCACATTACAGTCAATAAATGAGTTTCTGTAATGTGTCAATTATACCGTACCTCACAGCATCGCCATCGACCACCACGTTGGCAGGATCAAAAACACCTCAGGTGAGTGTTGGGAGGCTGTGTTCTGACAGCAAAATCTCGCGATATTTGAAGGGGAGGGGCGTGTCAGATTCcaagagaggagagagagaagagagagggaTAGAGGGGCGCTGTGGTAAGTTTGTAAACATTCTTCATCTGTCAAAAATGTGGTTTCTGTGATTGTGTAGACTTAAAAACAGAGTCTAAGTGTTGTAAATATGCGTTTAAAAAGTTCGTCTGTGGCCGCGAGTAACTTTTAAGAGGCGCTCGTGAGGCTGTCAGATTGGCAGTGGGCTACAGACGGAGTCGCGTTCACTGCAGCTCGCTCAGAGCTCTTGACAAGCGAGAGCAGAAAATCTCAGGGATAGAAAAGTACCTCTGGCCATCATTTATCACCTTATTTTTTGTCAACACTGTATTCAATTATGCTACCGAGTGTTCATATAGTGTAAGTATTTACGTTTTCTTGTATACATAAAGAGGCAAATTGGACACGATTACTTAGTTTGCTTCAAAGTCCCTTTTTTGCATACTTTTGTTTTCTAGCGGGGGGAGTACGAGCGGCCTGTACACCGAAAGTCCGTGAATTCCATCTTTTGAGTGGGATTTCCGTCCGCCAATGAGACATGACTAACAGTATTGATTGACGTGTGTTGTGGCCAAACAGCAATTGGGGATCTTTGATAGACGCGCGAGTGACCAATCGTAGTAAGTGTAGGGCGGGCACGTACGGGAAAAGGCTGGCTTTAAAGTTGGCATGTTCGCAAGACATCAGGTTAGCATGGGTTTGCTAAATAGTTAGCGACGTTTATTTTCGGCTCGGCCACTAGAAACTAGCGTTATTTTTTAGTGTAATCTATAAATTCAACATACAAAGTACAAATTGCACATTAAAGTGTCActtaactttatttaaataaattgggCAGCCgtgtcttttgtttttattagtaaACATGCTATCTAAAAAGTTGTGTTAGTTATAGAAAACCACCATGATTGGCAGAATAACGAAtttataaat

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0016567 protein ubiquitination biological_process

KEGG:

id description
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-030131-5411 Predicted to be involved in protein ubiquitination. Predicted to act upstream of or within intracellular signal transduction. Is expressed in gut; liver; and yolk syncytial layer. Orthologous to human ASB8 (ankyrin repeat and SOCS box containing 8).

Ensembl:

ensembl_id ENSDART00000188394

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00045021 lncRNA downstream 249856 27233879 ~ 27245235 (-) True XLOC_022399
TCONS_00044738 lncRNA downstream 295996 27191956 ~ 27199095 (-) True XLOC_022400
TCONS_00044194 lncRNA downstream 371968 27113460 ~ 27123123 (-) True XLOC_022398
TCONS_00045020 lncRNA downstream 527686 26961010 ~ 26967405 (-) False XLOC_022396
TCONS_00044737 lncRNA downstream 735531 26749873 ~ 26759560 (-) True XLOC_022393
TCONS_00044209 lncRNA upstream 53926 27555849 ~ 27558715 (-) True XLOC_022406
TCONS_00045022 lncRNA upstream 150973 27652896 ~ 27675394 (-) True XLOC_022412
TCONS_00044220 lncRNA upstream 186708 27688631 ~ 27695173 (-) False XLOC_022413
TCONS_00045024 lncRNA upstream 225372 27727295 ~ 27729454 (-) False XLOC_022415
TCONS_00045023 lncRNA upstream 225372 27727295 ~ 27729454 (-) True XLOC_022415
TCONS_00044201 mRNA downstream 15533 27446929 ~ 27479558 (-) True XLOC_022403
TCONS_00044200 mRNA downstream 52547 27358722 ~ 27442544 (-) True XLOC_022402
TCONS_00044198 mRNA downstream 149666 27251626 ~ 27345425 (-) False XLOC_022401
TCONS_00044199 mRNA downstream 149666 27251636 ~ 27345425 (-) True XLOC_022401
TCONS_00044195 mRNA downstream 259688 27134942 ~ 27235403 (-) False XLOC_022399
TCONS_00044206 mRNA upstream 9786 27511709 ~ 27547931 (-) False XLOC_022405
TCONS_00044207 mRNA upstream 14192 27516115 ~ 27521895 (-) True XLOC_022405
TCONS_00044208 mRNA upstream 51863 27553786 ~ 27571667 (-) False XLOC_022406
TCONS_00044210 mRNA upstream 73616 27575539 ~ 27589829 (-) False XLOC_022407
TCONS_00044211 mRNA upstream 74291 27576214 ~ 27589508 (-) False XLOC_022407
TCONS_00044197 other downstream 259437 27206719 ~ 27235654 (-) False XLOC_022399
TCONS_00044183 other downstream 673323 26819114 ~ 26821768 (-) True XLOC_022395
TCONS_00044178 other downstream 819321 26675652 ~ 26675770 (-) True XLOC_022392
TCONS_00044148 other downstream 1702110 25789132 ~ 25792981 (-) False XLOC_022380
TCONS_00044132 other downstream 2568743 24880227 ~ 24926348 (-) True XLOC_022370
TCONS_00044212 other upstream 78241 27580164 ~ 27580292 (-) True XLOC_022408
TCONS_00044226 other upstream 307145 27809068 ~ 27822778 (-) True XLOC_022418
TCONS_00044236 other upstream 688606 28190529 ~ 28222959 (-) False XLOC_022424
TCONS_00044238 other upstream 699037 28200960 ~ 28223243 (-) True XLOC_022424
TCONS_00044248 other upstream 1683929 29185852 ~ 29257404 (-) False XLOC_022432

Expression Profile

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