RNA id: TCONS_00044312


Basic Information

Item Value
RNA id TCONS_00044312
length 751
lncRNA type retained_intron
GC content 0.32
exon number 2
gene id XLOC_022467
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 31426493 ~ 31436524 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTGAGCTTTTAGCACTTTTAGAAGATGTCTATCACGGTGTATTACAGCAGCGTCAGTGGCTCTAGAGAGGTAAAGCAACATCAGGGTGAGATTTTGGGGTTTTTGGATTCCAAAAAGATCAAATACTTTACCGTAGACATCTCCACAAGCAATGACGCAAAGGAGCAGATGAGGAAGAAAGTAGGAAACCCCTCAGCAATGCCTCCTCAGGTGTTTAATGGAGACAAGTACTGTGGGGTGAGTGAGTCTTGGCCTGCTGTCTCTtttgctaacactttattttaaagtgtcgTTGTAActacttattaattaattacatgtatACTTACTATATTGGTCCGAGAGGTTTAAGGTTAATAGGATGTTGTTATGTgttattattgtaaattttaaTTACTATAGTTAGTAAATAGAACATGTATCAATGAAACATTTATACATCTTCGATTCTGTAgaaggaatgtttttttttctccagtgttTAAAGTTATATTACAAAGATTTTCAATCCATAAAAAAGGACACACTAGTCCcttaaaattaacaaatatttacaaattatttactgtcagtaACATAAATGACCATACAGGTAAttgttatttatcattatttgttaCAGATTGCAGGTTGTATATAAGATCTTAACTGATATAAACTGCTATTTATAATGATAGTTGATTTGATGATGACCGCTGTTTATATTTGGGTTTaatatcattaattaaaaaattttaaggtAGTATTCAT

Function

GO:

id name namespace
GO:0045454 cell redox homeostasis biological_process
GO:0009055 electron transfer activity molecular_function
GO:0015035 protein disulfide oxidoreductase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060825-317 Predicted to enable protein-disulfide reductase activity.

Ensembl:

ensembl_id ENSDART00000139590

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00045034 lncRNA downstream 4153 31420811 ~ 31423522 (-) True XLOC_022466
TCONS_00045033 lncRNA downstream 23967 31401932 ~ 31403708 (-) True XLOC_022465
TCONS_00044302 lncRNA downstream 133493 31293552 ~ 31294182 (-) False XLOC_022462
TCONS_00044299 lncRNA downstream 161054 31253300 ~ 31266621 (-) True XLOC_022461
TCONS_00045032 lncRNA downstream 506664 30906424 ~ 30921011 (-) True XLOC_022458
TCONS_00044325 lncRNA upstream 215637 31644332 ~ 31645735 (-) False XLOC_022471
TCONS_00045035 lncRNA upstream 578210 32006905 ~ 32007796 (-) True XLOC_022480
TCONS_00044345 lncRNA upstream 665253 32093948 ~ 32100014 (-) True XLOC_022481
TCONS_00045036 lncRNA upstream 682623 32111318 ~ 32141320 (-) False XLOC_022482
TCONS_00045037 lncRNA upstream 690995 32119690 ~ 32141307 (-) True XLOC_022482
TCONS_00044309 mRNA downstream 24007 31401819 ~ 31403668 (-) False XLOC_022465
TCONS_00044307 mRNA downstream 26883 31380607 ~ 31400792 (-) False XLOC_022464
TCONS_00044308 mRNA downstream 31331 31380714 ~ 31396344 (-) True XLOC_022464
TCONS_00044305 mRNA downstream 54886 31358111 ~ 31372789 (-) False XLOC_022463
TCONS_00044313 mRNA upstream 11018 31439713 ~ 31512496 (-) False XLOC_022468
TCONS_00044314 mRNA upstream 11420 31440115 ~ 31512497 (-) False XLOC_022468
TCONS_00044315 mRNA upstream 11513 31440208 ~ 31506854 (-) False XLOC_022468
TCONS_00044317 mRNA upstream 11645 31440340 ~ 31506854 (-) False XLOC_022468
TCONS_00044316 mRNA upstream 11645 31440340 ~ 31506854 (-) True XLOC_022468
TCONS_00044303 other downstream 82181 31339453 ~ 31345494 (-) True XLOC_022462
TCONS_00044285 other downstream 728988 30658642 ~ 30698687 (-) True XLOC_022453
TCONS_00044283 other downstream 728999 30517199 ~ 30698676 (-) False XLOC_022453
TCONS_00044284 other downstream 819574 30607983 ~ 30608101 (-) True XLOC_022454
TCONS_00044280 other downstream 1382022 30042489 ~ 30045653 (-) True XLOC_022450
TCONS_00044322 other upstream 212427 31641122 ~ 31648016 (-) False XLOC_022471
TCONS_00044327 other upstream 264673 31693368 ~ 31717710 (-) True XLOC_022472
TCONS_00044329 other upstream 326057 31754752 ~ 31754868 (-) True XLOC_022474
TCONS_00044334 other upstream 374387 31803082 ~ 31804360 (-) True XLOC_022475
TCONS_00044337 other upstream 478303 31906998 ~ 31913242 (-) False XLOC_022476

Expression Profile

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