RNA id: TCONS_00045035


Basic Information

Item Value
RNA id TCONS_00045035
length 465
lncRNA type antisense_over
GC content 0.38
exon number 2
gene id XLOC_022480
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 32006905 ~ 32007796 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGCCACATTATGAAAAAGTACAACATATTTTACAAAATAGAAAACAAGCCAGTAAATCCACAGACTGCGTGATCCAtattcattttcagaatgagagCAATTTCCAACACAACATTAACAAGCAAGCATGAAACACTTGAACGAGCTCTTACAGGTGTTGAAATCATGATTTGTTTGTGTACTTTCTTCCTGACAGACCAGATATAGACTAGGAACTGGCATGGTGAATTGTTCATTGTTCAGTTTTCAAATGGCAGACTTTTTTCTAGGACAGAAAACATGCCTTATTTCAGATGTGCAACATGAAATATATGTATCAGGTGGCAATTTGGATGAAACAGTGTTGGAAGAGAACACCGAAAGTCTATACAAGAAGTGCTGGAGAGCTGGCATCTGTTTGGCAGGAATATATCCAACAGATCCAATCATAAACCCATCACTGAGGGAAATACGGCTGTGCTTAT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044325 lncRNA downstream 361170 31644332 ~ 31645735 (-) False XLOC_022471
TCONS_00044312 lncRNA downstream 578210 31427675 ~ 31428695 (-) True XLOC_022467
TCONS_00045034 lncRNA downstream 583383 31420811 ~ 31423522 (-) True XLOC_022466
TCONS_00045033 lncRNA downstream 603197 31401932 ~ 31403708 (-) True XLOC_022465
TCONS_00044302 lncRNA downstream 712723 31293552 ~ 31294182 (-) False XLOC_022462
TCONS_00044345 lncRNA upstream 86152 32093948 ~ 32100014 (-) True XLOC_022481
TCONS_00045036 lncRNA upstream 103522 32111318 ~ 32141320 (-) False XLOC_022482
TCONS_00045037 lncRNA upstream 111894 32119690 ~ 32141307 (-) True XLOC_022482
TCONS_00045038 lncRNA upstream 154638 32162434 ~ 32163181 (-) True XLOC_022485
TCONS_00045039 lncRNA upstream 340203 32347999 ~ 32352704 (-) True XLOC_022489
TCONS_00044342 mRNA downstream 32845 31972384 ~ 31974060 (-) True XLOC_022479
TCONS_00044340 mRNA downstream 37119 31962383 ~ 31969786 (-) False XLOC_022478
TCONS_00044341 mRNA downstream 39351 31962384 ~ 31967554 (-) True XLOC_022478
TCONS_00044339 mRNA downstream 74829 31920840 ~ 31932076 (-) True XLOC_022477
TCONS_00044335 mRNA downstream 93616 31901350 ~ 31913289 (-) False XLOC_022476
TCONS_00044343 mRNA upstream 71250 32079046 ~ 32092443 (-) False XLOC_022481
TCONS_00044344 mRNA upstream 80106 32087902 ~ 32100106 (-) False XLOC_022481
TCONS_00044346 mRNA upstream 120603 32128399 ~ 32129569 (-) False XLOC_022483
TCONS_00044347 mRNA upstream 120922 32128718 ~ 32129614 (-) True XLOC_022483
TCONS_00044350 mRNA upstream 141473 32149269 ~ 32194397 (-) False XLOC_022485
TCONS_00044337 other downstream 93663 31906998 ~ 31913242 (-) False XLOC_022476
TCONS_00044334 other downstream 202545 31803082 ~ 31804360 (-) True XLOC_022475
TCONS_00044329 other downstream 252037 31754752 ~ 31754868 (-) True XLOC_022474
TCONS_00044327 other downstream 289195 31693368 ~ 31717710 (-) True XLOC_022472
TCONS_00044322 other downstream 358889 31641122 ~ 31648016 (-) False XLOC_022471
TCONS_00044348 other upstream 132047 32139843 ~ 32139958 (-) True XLOC_022484
TCONS_00044359 other upstream 318171 32325967 ~ 32334114 (-) True XLOC_022488
TCONS_00044367 other upstream 867750 32875546 ~ 32875660 (-) True XLOC_022497
TCONS_00044368 other upstream 1211209 33219005 ~ 33219128 (-) True XLOC_022498
TCONS_00044369 other upstream 1293508 33301304 ~ 33301419 (-) True XLOC_022500

Expression Profile

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