RNA id: TCONS_00044341


Basic Information

Item Value
RNA id TCONS_00044341
length 1339
RNA type mRNA
GC content 0.39
exon number 3
gene id XLOC_022478
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 31962383 ~ 31969786 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGGATGAATGTGGGCGTTGCTCACAGCGAGGTGAACCCGAACACGCGGGTGATGAACAGCCGGGGAATCTGGCTGGCCTACCTGCTGCTCACCACCGCCCTGCATGTGGTGCTGCTCAGCATCCCGTTTCTCAGCGTGCCGGTGGTCTGGACGCTCACCAATATCATTCACAACCTGGCGATGTATCTGTTTTTGCACACAGTCAAAGGCACACCGTTTGAAACACCAGACCAAGGCAAAGCACGTTTGCTCACACACTGGGAACAGATGGACTACGGCATTCAGTTCACAGCATCCAGAAAGTTCCTCACCATCTCACCTATTGTACTgtacATCTTGGCTAGCTTCTACACCAAATATGATACCACCCACTTCCTAGTCAACACAGGCTCGCTACTAAGTGTCCTCCTTCCCAAGTTGCCTCAGTTTCATGGAGTTCGTCTGTTTGGTATAAATAAATACTGATGAGACACTTCAGCACTCTCATGGAGGGAATGTAGCATTATGGAGATGAGATGACTGAAGTTACTTTACTCTCCATATGATGCTTCTTTGGGCCCGAAAGGCCTTTAAGGAACCAAATCTGCACTGGACTCAAgtacactatttaaaaaaaggcCTTCCACGCTCAGGTTCATTCAATctgtggcatttttttttttttttaatcctgtcttatgtctgattttttttctggTTAATAATGGTTAAATAAGGGTTTCTTAAATTCATCACATTCAAGGATGCTATTAACTGCATCAGACAATGTGCCAGTTATCATCATCATCCGCTGATGTTCAATTTTATTAAGGTCACTTTTCATAAACCCACATGATCGTGCATAACTATATTCAGACAGGTTTCTTTTGCATCAGTGTTCTGGTTTATATTACACAGGCAGCCACAGTAAATAAGATGCGTCTgatcataaaaacaaaacaataggttgtttagattttaatttgAATTGTGTCCGTtgcatttttcatttcatttgctCCGAAGCTGCAAAACAGCAATCTGTGATCAAGTGAATGTGAATCTGCTTTCTCTTAAGTTTATTGCTAAAGCTATTATGAGTTGATTAtcctgtatttattttcttttcatgaCACATTCCAATCTGAAGTAATTGCCAAggtgaaagtttattattattattaatgctattattattatatatacttttaacATGTCTGCATGGGTCATGTTTGTTTGCTATACAAAAGTGAAAGTATGTACCGTGGGGAACACATTAATATAGAAGTTAAAGCTGGATATAAGttgaaagttttagttttttttttacacatttgaaaataaagaaatattaaaatgt

Function

GO:

id name namespace
GO:0006672 ceramide metabolic process biological_process
GO:1900060 negative regulation of ceramide biosynthetic process biological_process
GO:0090155 negative regulation of sphingolipid biosynthetic process biological_process
GO:0090156 cellular sphingolipid homeostasis biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0035339 SPOTS complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060331-113 Predicted to be involved in cellular sphingolipid homeostasis; ceramide metabolic process; and negative regulation of ceramide biosynthetic process. Predicted to act upstream of or within negative regulation of sphingolipid biosynthetic process. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be part of SPOTS complex. Orthologous to human ORMDL2 (ORMDL sphingolipid biosynthesis regulator 2).

Ensembl:

ensembl_id ENSDART00000183973

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044325 lncRNA downstream 316649 31644332 ~ 31645735 (-) False XLOC_022471
TCONS_00044312 lncRNA downstream 533689 31427675 ~ 31428695 (-) True XLOC_022467
TCONS_00045034 lncRNA downstream 538862 31420811 ~ 31423522 (-) True XLOC_022466
TCONS_00045033 lncRNA downstream 558676 31401932 ~ 31403708 (-) True XLOC_022465
TCONS_00044302 lncRNA downstream 668202 31293552 ~ 31294182 (-) False XLOC_022462
TCONS_00045035 lncRNA upstream 39351 32006905 ~ 32007796 (-) True XLOC_022480
TCONS_00044345 lncRNA upstream 126394 32093948 ~ 32100014 (-) True XLOC_022481
TCONS_00045036 lncRNA upstream 143764 32111318 ~ 32141320 (-) False XLOC_022482
TCONS_00045037 lncRNA upstream 152136 32119690 ~ 32141307 (-) True XLOC_022482
TCONS_00045038 lncRNA upstream 194880 32162434 ~ 32163181 (-) True XLOC_022485
TCONS_00044339 mRNA downstream 30308 31920840 ~ 31932076 (-) True XLOC_022477
TCONS_00044335 mRNA downstream 49095 31901350 ~ 31913289 (-) False XLOC_022476
TCONS_00044336 mRNA downstream 49153 31901770 ~ 31913231 (-) False XLOC_022476
TCONS_00044338 mRNA downstream 49315 31907037 ~ 31913069 (-) True XLOC_022476
TCONS_00044333 mRNA downstream 152162 31802842 ~ 31810222 (-) False XLOC_022475
TCONS_00044342 mRNA upstream 4830 31972384 ~ 31974060 (-) True XLOC_022479
TCONS_00044343 mRNA upstream 111492 32079046 ~ 32092443 (-) False XLOC_022481
TCONS_00044344 mRNA upstream 120348 32087902 ~ 32100106 (-) False XLOC_022481
TCONS_00044346 mRNA upstream 160845 32128399 ~ 32129569 (-) False XLOC_022483
TCONS_00044347 mRNA upstream 161164 32128718 ~ 32129614 (-) True XLOC_022483
TCONS_00044337 other downstream 49142 31906998 ~ 31913242 (-) False XLOC_022476
TCONS_00044334 other downstream 158024 31803082 ~ 31804360 (-) True XLOC_022475
TCONS_00044329 other downstream 207516 31754752 ~ 31754868 (-) True XLOC_022474
TCONS_00044327 other downstream 244674 31693368 ~ 31717710 (-) True XLOC_022472
TCONS_00044322 other downstream 314368 31641122 ~ 31648016 (-) False XLOC_022471
TCONS_00044348 other upstream 172289 32139843 ~ 32139958 (-) True XLOC_022484
TCONS_00044359 other upstream 358413 32325967 ~ 32334114 (-) True XLOC_022488
TCONS_00044367 other upstream 907992 32875546 ~ 32875660 (-) True XLOC_022497
TCONS_00044368 other upstream 1251451 33219005 ~ 33219128 (-) True XLOC_022498
TCONS_00044369 other upstream 1333750 33301304 ~ 33301419 (-) True XLOC_022500

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000001_13256688_13260380.mRNA True 972 mRNA 0.46 7 CI01000001 13256583 ~ 13260380 (-)
eurasian perch (Perca fluviatilis) TU174638 False 481 lncRNA 0.41 2 NC_053123.1 37398287 ~ 37449835 (-)
mexican tetra (Astyanax mexicanus) TU174638 False 4239 TUCP 0.38 4 NC_035911.1 3655350 ~ 3661794 (+)