RNA id: TCONS_00045492


Basic Information

Item Value
RNA id TCONS_00045492
length 778
RNA type mRNA
GC content 0.48
exon number 8
gene id XLOC_022881
representative True

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 18286427 ~ 18445254 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACCATGGATGAATTCACTCCATTAGATTGCCTTTTGCCTTCagGAAAACAGCGGATTTGCTTGGTTATCCTAAACCAGCCGTTGGATGAGCGCTACTTTCATGTACTGTGGAGTAAAGCCCAGATCCGGGCCTGTGCGGATGGAGGTGCCAATCACCTGTACCGGCTCACGGAGGGCCGTCGCGAGAGTTTTCTTCCAGACTACATAAATGGAGACTTTGATTCGATCCTGCCAGAGGTCAAGGCGTTTTATGCGGGAAAGAACTGCAAGCTAATGGAAACGCCTGACCAGGATCTGACAGACTTCACTAAGTGTTTGGCCATTATGTTGGAGGAGATCAAAGCAAAGAAACTGCAGATAGACAGCATCGTAACACTGGGAGGTTTAGGAGGCCGTTTTGATCAAACCATGGCTACAGTGGAGACCTTGTTTCATGCACAAAAGATGACCGATCTGCCAGTTGTGGTTATACAAGACTCTTCTCTGGCCTTCCTCCTTAAAGAGGGCAGACATCACCAGCTGAATGTGAACACCGGCATGGAGGGTAAATGGTGCAGTCTGGTTCCTGTGGGCTCTCCCTGTCTCACCACAACTTCTGGGCTTAAATGGAACTTAGACAATCAAGTACTGGCTTTTGGACAACTAGTAAGCACATCCAACACTTACGAGGACCACGACCCTAAAGACTGCAGAAAACCTGTGACCATCACCACTGATAATCCCCTTTTGTGGAGTATGGGAATAAAACGACTTCAATCGAGCCAAACATTCCTTTAAC

Function

GO:

id name namespace
GO:0006772 thiamine metabolic process biological_process
GO:0016310 phosphorylation biological_process
GO:0009229 thiamine diphosphate biosynthetic process biological_process
GO:0004788 thiamine diphosphokinase activity molecular_function
GO:0030975 thiamine binding molecular_function
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016301 kinase activity molecular_function

KEGG:

id description
ko00730 Thiamine metabolism

ZFIN:

id description
ZDB-GENE-041010-176 Predicted to enable thiamine diphosphokinase activity. Predicted to be involved in thiamine diphosphate biosynthetic process. Predicted to act upstream of or within phosphorylation and thiamine metabolic process. Human ortholog(s) of this gene implicated in inherited metabolic disorder. Orthologous to human TPK1 (thiamin pyrophosphokinase 1).

Ensembl:

ensembl_id ENSDART00000172056

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00046961 lncRNA upstream 961547 17334678 ~ 17337959 (+) False XLOC_022877
TCONS_00046960 lncRNA upstream 964894 17332166 ~ 17334612 (+) True XLOC_022876
TCONS_00046959 lncRNA upstream 973861 17322486 ~ 17325645 (+) False XLOC_022875
TCONS_00045480 lncRNA upstream 973861 17322644 ~ 17325645 (+) True XLOC_022875
TCONS_00045479 lncRNA upstream 979657 17318521 ~ 17319849 (+) True XLOC_022874
TCONS_00046962 lncRNA downstream 2558 18446689 ~ 18463437 (+) True XLOC_022883
TCONS_00046963 lncRNA downstream 41538 18485669 ~ 18507866 (+) True XLOC_022884
TCONS_00045498 lncRNA downstream 275141 18719272 ~ 18723957 (+) True XLOC_022885
TCONS_00046964 lncRNA downstream 361025 18805156 ~ 18806892 (+) True XLOC_022886
TCONS_00046965 lncRNA downstream 432602 18876733 ~ 18878980 (+) False XLOC_022887
TCONS_00045486 mRNA upstream 935050 17345542 ~ 17364456 (+) False XLOC_022878
TCONS_00045485 mRNA upstream 935052 17345521 ~ 17364454 (+) False XLOC_022878
TCONS_00045487 mRNA upstream 936016 17349177 ~ 17363490 (+) True XLOC_022878
TCONS_00045483 mRNA upstream 958048 17334682 ~ 17341458 (+) False XLOC_022877
TCONS_00045478 mRNA upstream 1019602 17270129 ~ 17279904 (+) True XLOC_022872
TCONS_00045494 mRNA downstream 245849 18689980 ~ 18732002 (+) False XLOC_022885
TCONS_00045496 mRNA downstream 245887 18690018 ~ 18719125 (+) False XLOC_022885
TCONS_00045495 mRNA downstream 245887 18690018 ~ 18719125 (+) False XLOC_022885
TCONS_00045497 mRNA downstream 270081 18714212 ~ 18732395 (+) False XLOC_022885
TCONS_00045500 mRNA downstream 504534 18948665 ~ 19207056 (+) True XLOC_022888
TCONS_00045489 other upstream 221847 18077543 ~ 18077659 (+) True XLOC_022880
TCONS_00045488 other upstream 560871 17738519 ~ 17738635 (+) True XLOC_022879
TCONS_00045484 other upstream 961547 17335518 ~ 17337959 (+) True XLOC_022877
TCONS_00045482 other upstream 961980 17334678 ~ 17337526 (+) False XLOC_022877
TCONS_00045481 other upstream 973861 17322644 ~ 17325645 (+) False XLOC_022875
TCONS_00045533 other downstream 2344037 20788168 ~ 20788284 (+) True XLOC_022903
TCONS_00045551 other downstream 2828481 21272612 ~ 21272728 (+) True XLOC_022912
TCONS_00045555 other downstream 3085873 21530004 ~ 21534432 (+) True XLOC_022916
TCONS_00045559 other downstream 3185594 21629725 ~ 21629840 (+) True XLOC_022919
TCONS_00045565 other downstream 3276349 21720480 ~ 21748700 (+) False XLOC_022923

Expression Profile

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