RNA id: XM_036955406.1


Basic Information

Item Value
RNA id XM_036955406.1
length 2582
RNA type mRNA
GC content 0.54
exon number 21
gene id LOC110498417
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 64971235 ~ 65020599 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTTGGATTTATGCCAAGGTTTTTTAGGCTTGTAAAGACTTTAGTGGAAGTGGTAAAAGCcgacagtttaaaaaaataataatccagAATGCCCTTTACACCGTCCGGCTTCTTCTGTGACCGGCTGatccgggagagagagagaagagatggagaaggaTCCCTCAGCAAGCCCCTGCGCTTCAGCGGGCAGGACTTTACCGCACTGAAACAAGAGTGCCTCACCAAGAAGTGCCTGTTTGAGGATGACACCTTCCCAGCCTCCGTGGAGTCTCTGGGGTACAAGGAGCTGGGACACAAGTCCAACAAGGTCAAGAACATCGTCTGGAAGAGACCCAagGAGATCTGTGAGAACCCTCAGTTCATTGTGGGCGGAGCCAGCAGGACAGACATTTGCCAGGGAGATCTTGGTGACTGCTGGCTGCTGGCTGCTATAGCCTGTCTGACTCTGAATGAGAAGCTTCTCTACCGGGTCGTTCCTCAGGAACAGAGCTTCTCTGAGGGATATGGAGGAATCTTCCACTTCCAGTTCTGGCGCTATGGCGACTGGGTTGACGTTGTTATTGACGACCGCATCCCCACCTTCAACAGCCAGCTGGTGTTCACCAAGTCTGCCGAGAGAAATGAATTCTGGAGTGCCCTGCTGGAGAAGGCCTACGCCAAgcttcacggttcctacgaggccctgaagggcggtaacaccacggAGGCCATGGAAGACTTTACCGGGGGCGTGACAGAGTTCTATGAGATGAAGGAGGCGCCCAAGGAGCTGTACAAGATCATGAAGAAGGCCCTGGAGAGAGGCTCTATGATGGGCTGCTCTATCGACTCCCTGGTTCCTGCTCGTTTCGAGACGCGCACTGTGACTGGCCTTGTGAAGGGCCACGCCTACTCTGTGACTGCCGTCGAGGAGTGTAAGCAGTCCCAGCACAAGGAGCCTAAGGTGCGTCTGGTGCGCCTCAGGAACCCCTGGGGACAGGTGGAGTGGAATGGGCCCTGGAGTGACAACTCTAAGGAGTGGGTGTCTCTGTCCAAGGGAGAGAAGGACAAGCTCCAGCATCAAAGTGCGGAGGACGGAGAGTTCTGGATGGCCTTTGAGGACTTCAAGAAGAACTACACTAAGATTGAGATCTGCAACCTGACCCCTGATGCCTTGGAGGACGATAAGATCCACAAGTGGACGGTGTCTGTGAACGAGGGTCGCTGGGTCAGAGGCTGCTCCGCCGGGGGCTGTAGAAACTACCCAGATACTTTCTGGACCAACCCTCAGTACCGCCTGCGTCTCTTGGAGGAGGATGATGACCCAGAAGACAACGAGGTGGCGTGTTCCTTCGTGATCGCTCTGATGCAGAAGAACAGacggaaagagaggaagatgggaGCCAATCTCTTCACCATCGGATTTGCCATCTACGAGgtgCCGAAGGAGATGCACGGAAACAAGCAGCACATGCAGAAGGACTTCTTCCTGTTCAACTCATCCAAGGCTCGCTGCAAGTCCTACATCAACCTGAGGGAGGTGACCCAGCGCTTCCGTCTGAGCCCCGGGGAGTACGTGATCATCCCGTCTACCTACGAGCCTCACCAGGAGGGAGAGTTCATCCTCAGAGTCTTCTCCGAAAAGAGGAACACctcagaGGAGATAGAGAACAGGATCGAGGCTGACCATCCAGTGCCGGCCCCAGCCAATGCgggggaggagagtgaggaggacCAGCAGTTCCGGAGCCTCTTTCAGCAGATAGCCGGGGATGAAATGGAAATAACCGCCAACGAGCTGAAGAATGTCCTCAACAGCATCGTCTCCAAACataAGGACCTGAACACAGAGGGTTTTAGCCTGGAGTGCTGCAGGAGCATGATCTCTCTCATGGACATGGACGGGACGGGCAGACTCAACCTGCAGGAGTTCAGACATCTCTGGAACAAGATCAAGCAGTGGCAGGGAATTTTCCAACACTACAACTCGGACCAGGCTAGTAGCATCAACAGCTACGAAATGAGAAATGCTGTCAACGATGCAGGCTTCCGTCTCAACAATCAGCTCTATGACATCATCACCATGCGTTACGCCAACGAGGGCATGAACATCGACTTTGAcagcttcatcagctgtctggtcCGGCTCGAAGCCATGTTCAGGGCGTTCCAGGCCTTCGACCAGAATGGAGACGGTACGATCAGACTCAGTGTCTTGGAGTGGCTCCAGCTGACCATGTATGCCTAGATTTCCAGAAAGGTGTTCTCAGCCAATCGGCCTCTCTGGTGACACCCACCCAACGTGAAGAACAGAGGCGAACTACCAGCATTTACCTCAGTCGTGACAGTGCCAGACCGTAGCGCTAACCCTGCCAGTACCACATCCACCACCTTCGTCCTGTTCACCTCACGTCATCCCCCAGTCCTCACAATAGACTGCTACTCTTACCAGTCCATACTACTTACAACTCCATCAcatccttctccatctctctctccctccaaccttctccatctctctctctctctctccctctaaccttctccttccccatctctctctccctctaaccttctccttccccatctcactctctctc

Function

GO: NA

KEGG:

id description
K08573 CAPN3; calpain-3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1886540 lncRNA upstream 7304 64957920 ~ 64963940 (+) True G1648600
TU1886502 lncRNA upstream 52135 64917374 ~ 64919109 (+) True G1648570
TU1886505 lncRNA upstream 55620 64915139 ~ 64915624 (+) True G1648573
TU1886520 lncRNA upstream 56439 64914482 ~ 64914805 (+) True G1648583
TU1886508 lncRNA upstream 69737 64898001 ~ 64901507 (+) True G1648576
TU1886548 lncRNA downstream 1472 65022071 ~ 65023620 (+) True G1648605
TU1886583 lncRNA downstream 3653 65024252 ~ 65027253 (+) False G1648623
TU1886586 lncRNA downstream 3653 65024252 ~ 65026897 (+) False G1648623
TU1886587 lncRNA downstream 3653 65024252 ~ 65025101 (+) False G1648623
TU1886588 lncRNA downstream 3653 65024252 ~ 65026839 (+) False G1648623
XM_036955390.1 mRNA upstream 418330 64540287 ~ 64552914 (+) False LOC118941527
XM_036955391.1 mRNA upstream 418330 64540297 ~ 64552914 (+) True LOC118941527
XM_036955392.1 mRNA upstream 418878 64540285 ~ 64552366 (+) False LOC118941527
XM_036953840.1 mRNA upstream 488981 64481427 ~ 64482263 (+) True LOC118941371
XM_036955384.1 mRNA upstream 750675 64215286 ~ 64220569 (+) True LOC118941526
XM_036955407.1 mRNA downstream 24812 65045411 ~ 65070228 (+) False wdr32
XM_036955408.1 mRNA downstream 24813 65045412 ~ 65070228 (+) True wdr32
XM_036955409.1 mRNA downstream 56781 65077380 ~ 65103465 (+) True LOC110498306
XM_036955413.1 mRNA downstream 88086 65108685 ~ 65142820 (+) False manba
XM_036955410.1 mRNA downstream 88087 65108686 ~ 65142820 (+) False manba
TU1886125 other upstream 842176 64128208 ~ 64129068 (+) True G1648296
TU1885128 other upstream 1579412 63391625 ~ 63391832 (+) False LOC110498409
TU1885075 other upstream 1767187 63202756 ~ 63204057 (+) False G1647477
TU1884975 other upstream 1894101 63075149 ~ 63077143 (+) True G1647411
TU1884898 other upstream 1952556 63016955 ~ 63018688 (+) True G1647342
TU1887705 other downstream 441174 65461773 ~ 65463454 (+) True G1649268
TU1887728 other downstream 523778 65544377 ~ 65545055 (+) True G1649291
TU1887755 other downstream 557840 65578439 ~ 65582582 (+) True G1649309
TU1887771 other downstream 580361 65600960 ~ 65602416 (+) True G1649319
TU1887742 other downstream 714015 65734614 ~ 65812816 (+) False LOC110498653

Expression Profile