RNA id: TCONS_00049844


Basic Information

Item Value
RNA id TCONS_00049844
length 721
RNA type mRNA
GC content 0.48
exon number 2
gene id XLOC_025237
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 19207176 ~ 19210637 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGGCATCTGCTTCCCAAAGCACAGGTAGACCATCAGGAAACCAGTGTGTGAGTATCTGCTCTCAGTATGATGTGGAAGACCTCGGCTCTCGTAGTGTGTCTGCTGCTGGCTGGAGTAAAGGCGCTGGACGCCGGGCCCTCGTATGGAGTCAAATTATGCGGCAGGGAGTTCATCCGTGCTGTCATCTTCACCTGCGGAGGATCCCGATGGAAACGCTCTTTAACAAACACAGATGAAATCCTGGACTTGTTCAACTCATATGACAGTAATGCCGCAGACGGCTCGGTACTGTTCGGCTCAGCATCCTCCTCTTCCCAGCATGCCACTGACTCAAATCTCCCACCACTGGGACAAGGTGAACAGGACGGCAGCGTGTTCAGCAGGCCTGCTCGCTCTCTCATTTCAGAGGAGGTGCTTGAGGCACTGCGGAGCGTAGACAGAAAGGGACGGGATGTGGTGGTGGGACTGTCCAACGCCTGCTGCAAATGGGGCTGCAGTAAAGGAGAAATCAGCTCCCTCTGCTGAGACCAACCTTCTTTACTGCATGAGtgaataagagtgtgtgtgtctacTTCTTTCTGCTTTGAATTATAATTGTAAATCTCATTGAGTTCTGATGTTGCATTTAACTTCAGATgttattttataatgcttgatgttgtattgtatttattttttttgtattgaattcaGTGTGTGAATCCTACTGGAGTACATTTC

Function

GO:

id name namespace
GO:0005576 extracellular region cellular_component
GO:0005179 hormone activity molecular_function
GO:0001664 G protein-coupled receptor binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050310-3 Predicted to enable G protein-coupled receptor binding activity. Predicted to be located in extracellular region. Is expressed in several structures, including female organism; gonad; intestine; male organism; and nervous system. Orthologous to human RLN3 (relaxin 3).

Ensembl:

ensembl_id ENSDART00000087803

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00049829 lncRNA upstream 418691 18771528 ~ 18788485 (+) True XLOC_025229
TCONS_00052636 lncRNA upstream 534885 18670824 ~ 18672291 (+) True XLOC_025227
TCONS_00049812 lncRNA upstream 807333 18399317 ~ 18399843 (+) True XLOC_025220
TCONS_00052635 lncRNA upstream 1010050 18189609 ~ 18197126 (+) False XLOC_025218
TCONS_00049852 lncRNA downstream 125888 19336525 ~ 19341041 (+) False XLOC_025242
TCONS_00049856 lncRNA downstream 145296 19355933 ~ 19360577 (+) True XLOC_025244
TCONS_00052334 lncRNA downstream 262326 19472963 ~ 19473197 (+) True XLOC_025248
TCONS_00049864 lncRNA downstream 454703 19665340 ~ 19677031 (+) True XLOC_025251
TCONS_00052637 lncRNA downstream 849041 20059678 ~ 20064732 (+) False XLOC_025257
TCONS_00049841 mRNA upstream 239523 18936009 ~ 18967653 (+) False XLOC_025236
TCONS_00049836 mRNA upstream 283261 18846488 ~ 18923915 (+) True XLOC_025232
TCONS_00049834 mRNA upstream 286932 18840810 ~ 18920244 (+) False XLOC_025232
TCONS_00049833 mRNA upstream 286932 18840810 ~ 18920244 (+) False XLOC_025232
TCONS_00049835 mRNA upstream 340640 18840893 ~ 18866536 (+) False XLOC_025232
TCONS_00049845 mRNA downstream 5930 19216567 ~ 19238394 (+) True XLOC_025238
TCONS_00049846 mRNA downstream 35167 19245804 ~ 19281878 (+) False XLOC_025239
TCONS_00049847 mRNA downstream 38336 19248973 ~ 19282525 (+) True XLOC_025239
TCONS_00049848 mRNA downstream 88672 19299309 ~ 19321404 (+) False XLOC_025240
TCONS_00049849 mRNA downstream 88672 19299309 ~ 19323689 (+) True XLOC_025240
TCONS_00049840 other upstream 239731 18936006 ~ 18967445 (+) False XLOC_025236
TCONS_00049843 other upstream 265462 18936080 ~ 18941714 (+) True XLOC_025236
TCONS_00049842 other upstream 267476 18936046 ~ 18939700 (+) False XLOC_025236
TCONS_00049839 other upstream 289593 18917461 ~ 18917583 (+) True XLOC_025235
TCONS_00049838 other upstream 314410 18892650 ~ 18892766 (+) True XLOC_025234
TCONS_00049850 other downstream 102354 19312991 ~ 19313107 (+) True XLOC_025241
TCONS_00049853 other downstream 138801 19349438 ~ 19354938 (+) True XLOC_025242
TCONS_00049854 other downstream 139082 19349719 ~ 19349817 (+) True XLOC_025243
TCONS_00049874 other downstream 1469286 20679923 ~ 20680038 (+) True XLOC_025262
TCONS_00049876 other downstream 1814516 21025153 ~ 21030871 (+) False XLOC_025264

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000034_04466151_04467388.mRNA True 844 mRNA 0.46 2 CI01000034 4465852 ~ 4467480 (-)