RNA id: TU2378563


Basic Information

Item Value
RNA id TU2378563
length 1762
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G2080139
representative True

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 38065272 ~ 38067033 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgtgtgcgtgcgtgcatgtgtgtatgtgtaagtgtatgtgtgtatgtcagatgtagagttgaaatgtattacattttgagtttgcatcgcAATATTGCATCTTATAAACATCACAGAAGATGGAAATATAACCAAAcggtttgacatagaaacactggatcttagtctttaaaaaaaatatataatcttgactaatattaataacatttcacccatgaggccactaggtaatttgactgcaggaaagggctataAGCTTACAAACAGTGTTGCTCAATTAttgtattgtttttttataaCAATTGCAAATGTTAAACCTTTACTGTAATTTATTAAAAAATGCATTAAATCAACATCAACAAATAATATTTgcatatgttgtagcttagactCTATTTAACATCTGAGGTGTTGGTGTTGTGCCAGCTATCGGTTGAGATAGAGCATTCTGTTGGATACAGTGTGGTTGTAACTTCAGTCATAGAAATTGAATTAATAGAACAGACCTATCCCTTTAGACCACTGCTGGTACACCATTGACATTTAAGTTTAATTTGAAATGTTAACTTTTAATTACTACCACAAAGATGACATCCGGTCCACCCACCGTTGAATGTCAACTTAAATGGTCATGTCTATTCTATTATCTATATTTCTAGgatttcaataggtttcctatggaGAATTGACAGCATAAAAAAAACcaacagatattcccattcaagtcagcaTTCTGATGTGTGGTcctccaaccatctttgtggtaccTTTTGAAAGCTGAAATGTTAATTTAAATCCCATTTTAGTCCATTTATCATCCGCAACATGACatccaccctgtattcaagagcatggtGTGTCTCAACTGATGGTGGGAACAACACAAACCCCTTAGATTATGTAaaatagggtctaagctacaGCATATGCAAATATGAAACAAATCAGAGAATATGTGTTCAGTTAATTAAGGtttaaggttaaaaaaaaagacatacagtgccttcagaaagtaccccttgacttattccacattttgttgtgttacagcctgaattcaaaatgcattaaatctattatttttctcacccatctacattcATGACTAAATTAAAacctttttagaaatgtttgcaaatgtattggaCATTAGATACAGAAATATCTTGTTTAgacaagctctgtcaaattggttgttaattattgctagacaaccattttcaggacttgccatagatttttaagtAGATTTAAGATAAAACTGTAACCCTGccaatcaggaacattcactctattcttggtaagcaacctcagtgtagatttggccttgtgttttgggttattgtcctgctgaaaggtgaattcgtctcccagtgtctggtagaaagcagagCGGGTTTTCCTCTAGTATTTTCCCTGTGCTTAGCTccgttctgtttattttttatcttgaAAAACTGCCCAGtgcttaacgattacaagcataaccataacatgatgcagacaccacAAATGTGAGGAGTGGTActaagtaatgtgttgtattggatttgcgctaaacataacactttgtattcaggacaaaaagtaattTGCTTTACCAGATTTTTTGCAATATgactttagtgtcttgttgcaaacaggatgaatgttttggaatattttttttctgaacaggcttccttcttttcactctgtcgatTAGGTTAGTAATGTGgagcaactacaatgttgttgatccatcctcagttttctcctatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2378562 lncRNA upstream 581 38063663 ~ 38064691 (+) True G2080138
TU2378555 lncRNA upstream 14583 38050331 ~ 38050689 (+) True G2080133
TU2378541 lncRNA upstream 23796 38041158 ~ 38041476 (+) True G2080119
TU2378502 lncRNA upstream 56395 38008671 ~ 38008877 (+) True G2080080
TU2378496 lncRNA upstream 64734 38000301 ~ 38000538 (+) True G2080074
TU2378593 lncRNA downstream 23933 38090966 ~ 38091176 (+) True G2080164
TU2378626 lncRNA downstream 53424 38120457 ~ 38121045 (+) True G2080197
TU2378706 lncRNA downstream 110381 38177414 ~ 38177666 (+) True G2080275
TU2378763 lncRNA downstream 156322 38223355 ~ 38223567 (+) True G2080330
TU2378781 lncRNA downstream 172909 38239942 ~ 38240210 (+) True G2080348
XM_021588455.2 mRNA upstream 5159 38052633 ~ 38060113 (+) True LOC110508017
XM_036965780.1 mRNA upstream 496399 37536529 ~ 37568873 (+) False LOC110508012
XM_036965781.1 mRNA upstream 496399 37552714 ~ 37568873 (+) True LOC110508012
trnat-agu-152 mRNA upstream 559470 37505729 ~ 37505802 (+) True trnat-agu-152
trnat-agu-151 mRNA upstream 559638 37505561 ~ 37505634 (+) True trnat-agu-151
LOC110507217 mRNA downstream 402885 38469918 ~ 38474599 (+) True LOC110507217
XM_021588440.2 mRNA downstream 552517 38619550 ~ 38628170 (+) True LOC110508002
XR_005040116.1 mRNA downstream 972540 39039573 ~ 39039625 (+) True LOC118944799
XM_036965220.1 mRNA downstream 1600956 39667989 ~ 39681560 (+) False LOC110508028
XM_036965219.1 mRNA downstream 1600971 39668004 ~ 39680132 (+) True LOC110508028
TU2378436 other upstream 120121 37944932 ~ 37945151 (+) True G2080014
TU2377942 other upstream 245986 37815878 ~ 37819286 (+) False G2079657
TU2377944 other upstream 245986 37815878 ~ 37819286 (+) True G2079657
TU2377712 other upstream 697136 37366739 ~ 37368136 (+) True G2079468
TU2377335 other upstream 784440 37279105 ~ 37280832 (+) True G2079197
TU2380510 other downstream 1760625 39827658 ~ 39837383 (+) True G2081884
TU2380477 other downstream 1828634 39895667 ~ 39913078 (+) False LOC110507223
TU2380578 other downstream 1864841 39931874 ~ 39933835 (+) True G2081949
TU2380828 other downstream 1890182 39957215 ~ 39957751 (+) True G2082162
TU2381755 other downstream 2776481 40843514 ~ 40844780 (+) False LOC110508042

Expression Profile