RNA id: TU2483684



Basic Information


Item Value
RNA id TU2483684
length 1047
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id G2173120
representative True

Chromosome Information


Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 29606747 ~ 29607845 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CTGGTTTGAAGAATGTTCAATTGTTAATAATGCCGTCCTGGTTACTGTCCGGGTTGACATCTTAAATTTCCGGGGAGGGGGTAACAACTTTACAGAATCTCAAAACTCGATGTTCATCTGTCCTCTGTTTGTTTTTGGGGGCTATCTTGTttctttagctaacgttagctagctagctaacttatcaAAACGTTTCTCATAAGTACCCTTGTCTGGCGGCTAGCTGGCTACGTGTCGAAAgcgtaaactagcTAGCTGAAGTAGTTAAtcgtcagtaaaaaaaaaatagctaCCTATCAATAATATGTAAGTAGAGTTAAAAGCAAAGTTATCGATTCACACGTATCTGAATAAAGTAACGTTATCACTGCATTCACAAGCTAGCTACAGTACCTAGCTACGTTAACGTTACATTGGTGCGCCTATTCCACTCTCTGGATGTACAAAAGTGCTTCGCCAATAACACTGAGCTGTGCAGTGGGTACGATGAGCTGTCAAGTTATAGGGCTCTGTTAGTTAACGTTAAAGCGTTACCCAACGCGAGGTTTGTTCCTACAAGTACGTTATACGGTAAAATCTAGTCCGGGGATTAGCAAACTTTTTCGGCCACGCCGATATATAGCAACAACCCGAACGTCCTCTTTGGATGAAGGAAAGTCAAACGCTAGTTACATAGCATGAACTATAATAAACAGTCAACCCTCAGCTGTAATGCGAATGAAAACAACATAATAGTTGACAATGCAGCTTGCTGATGTTAGCTAGCGTAGGCTAGTTTCTCTTCACTGCACAGGTAAGAATCCGCGAGTTTAACGAGTAAAACAACCAGCGCAACGTCCTGACCAGCTAGCAACTAATGTTAGCTTTCTAGCTCTCCCGTCCGTCTTTAGCATTGCTAATAAAATGTGAAATAGGTTGAAGCTAGCTATCTACACTAGCATGTTTCAAGATGAAAATAGCTAGATACAGCGACTAGTAATCAAGTTGATTCAGAGTTTGTCCCCCCCCGCTCTAGTTGAGTATGATTGCTGCTGGGTCGCCGAATCT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2483681 lncRNA upstream 12456 29591963 ~ 29594291 (+) True G2173117
TU2483675 lncRNA upstream 19275 29585594 ~ 29587472 (+) True G2173114
TU2483673 lncRNA upstream 25023 29580614 ~ 29581724 (+) True G2173113
TU2483651 lncRNA upstream 30992 29575253 ~ 29575755 (+) True G2173106
TU2483644 lncRNA upstream 38284 29568140 ~ 29568463 (+) True G2173104
TU2483663 lncRNA downstream 18714 29626559 ~ 29629526 (+) False G2173109
TU2483657 lncRNA downstream 20179 29628024 ~ 29632232 (+) True G2173109
TU2483664 lncRNA downstream 26450 29634295 ~ 29635660 (+) False LOC110509968
TU2483665 lncRNA downstream 27028 29634873 ~ 29635843 (+) True LOC110509968
TU2483966 lncRNA downstream 43485 29651330 ~ 29651986 (+) True G2173363
XM_021591204.2 mRNA upstream 33303 29570335 ~ 29573444 (+) True LOC110509964
XR_005040535.1 mRNA upstream 109462 29487508 ~ 29497285 (+) True LOC118945365
XM_021591202.2 mRNA upstream 169685 29433858 ~ 29437062 (+) True LOC110509962
XM_036967814.1 mRNA upstream 178879 29325241 ~ 29427868 (+) True LOC110509959
XM_021591195.2 mRNA upstream 287092 29315245 ~ 29319655 (+) True LOC110509958
XM_021591216.2 mRNA downstream 2882 29610727 ~ 29624280 (+) True LOC110509967
XM_021591217.2 mRNA downstream 25546 29633391 ~ 29637493 (+) False LOC110509968
XM_021591218.2 mRNA downstream 30723 29638568 ~ 29645471 (+) True LOC110509969
XM_021591219.2 mRNA downstream 44673 29652518 ~ 29662236 (+) False LOC110509970
XM_021591226.2 mRNA downstream 58825 29666670 ~ 29675086 (+) False LOC110509973
TU2483674 other upstream 19275 29585594 ~ 29587472 (+) False G2173114
TU2483638 other upstream 46788 29559570 ~ 29559959 (+) True G2173098
TU2482435 other upstream 927070 28678848 ~ 28679677 (+) True LOC110509373
TU2482164 other upstream 1293596 28303205 ~ 28313151 (+) True gigyf1b
TU2480666 other upstream 2281982 27322105 ~ 27324765 (+) False G2170458
TU2483968 other downstream 44724 29652569 ~ 29662234 (+) True LOC110509970
TU2484185 other downstream 261293 29869138 ~ 29871317 (+) False LOC110509988
TU2484176 other downstream 286249 29894094 ~ 29896279 (+) True G2173551
TU2484191 other downstream 344692 29952537 ~ 29953810 (+) True LOC110509998
TU2484310 other downstream 528878 30136723 ~ 30137320 (+) True G2173675

Expression Profile