RNA id: TU2535831


Basic Information

Item Value
RNA id TU2535831
length 3065
lncRNA type antisense_over
GC content 0.47
exon number 4
gene id G2216976
representative True

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 25819255 ~ 25857045 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAGTCCCAAACTTCCCAGCAACCCCCTCAATTTCCCCAATTTTTTCTTTGTCAgttgcaaaatgtatagaattgcaggaaattagctttcaCATTGCCACATTTTATGTCAGCTCCATGGAAAAATGTATATAATTGCAGGAAAGTAGCCCTGTTTTAATCCAGAAAAAGTGCTTATTGCTAATAGCACACTTGcctgataatatggtatggtgccATGTATAGACTATGGTAAGAGTCAGccctaaacatttttttttacaatatgttATTGGGCTCATTTATGGGGGGAGATCATAGACAGATCGTGTTGGGATAATTTGATTTTCATTCATTTTAGAGTAGAACGTCCTTTTAAAAATAAATGACATTCTCACAGTCCTTCTATAAAAACTGTCCAGGGGGGGCGGCGCATGTCCCCTGTGTCTGCCCCACCCCCCACGACCTTTCCACTTCTGAAAAAAATTAAAATTAACTGGGGGAAACATTGGactcatgcacacagacacacacaccacacacaaaaacgtacacacacacacacacaccatccaaaCTTGACACTAAATTAGGTTTCTTTAATATTATAATTCTCAATTATACTCTTATGCTATTCAACAGTTAGTTCAGTATGTACACACTGGTCATAtctcaaatggccccctattcctcACATAGTGCACCAGTCCTGACCAGAGCCCCAAAGACTTGTTCCTTTAGTCTAATCCAAGACTAAAAAAGCATGCTCAATACATGTGGTAAAGACCTCAATCGAACTCAACCAAAATAATGGTAATGCCACACGTGTCCCTCCGTGGGGTATAAATCCAGAATCTCCTCATTGCCGGCCATCaaaatgtgtgtgtttacatgtgtatTTCAAACTATGTTGGGGTAAAAATCGGAGTATAATGCTggtatggatgtcaaccccaatacaTGTTCATATCATTGttaccaatcaactgcattacactTAGACAGACTGGCCAGATGAACccaggtgaaggctatgatcccttattgatgtaatttgttaaatCTACTTTAAAATCATTGTAAAttaaggagacaggttaaagaagcctggattgtgtatgtgtgccattgaggcTGAAAGGCCCCAAAAAATTATTTATGTGCCCTTGAACGGGGTGTGGTAATAGGGGCCaggcggtagtagtagtatggtagtaggggccaggcggtagtagtagtatggtagtagtagtatggtagtaggggccaggcggtagtagtagtatggtagtaggggccaggcggtagtagtagtatggtagtaggggccaggcggtagtagtagtatggtagtaggggccaggcggtagtagtagtatggtagtaggggccaggcggtagtagtagtatggtagtaggtgccaggcggtagtagtagtatggtagtaggggccaggcggcggtagtagtagtatggtagtaggggccaggcggtagtagtagtatggtagtagtagtatggtagtaggggccaggtggtagtagtagtatggtagtaggggccaggcggtagtagtagtagtatggtagtaggggccaggcggtagtagtagtatggtagtagtagtatggtagtaggggccaggtggtagtagtagtatggtagtaggggccaggtggtagtagtagtatggtagtaggggccaggtggtagtagtagtatggtagtaggggccaggtggtagtagtagtatggtagtaggtgccaggtgcaccggtttgagtgtgtcaaactGCAACGCTGTAAAGTTTTCActttcaacagtttcccgtgtttatcaagaatggtccaccacccaaaggacatccagacaacttgacaactgtaggaagcattggcgttaaccagaatccctgtggaacacttgacacctcgtagagtccatgccctgacgaattgaggctgttctgatggcaaaaaggaggggggagggggttcaACTAAAttttaggaagatgttcctaatgttttctacaTTCAGTGTACATCATGAGAGAATTGAcgaatatccactttgttagatcagatttTTTGAATGGGCACCAATGACAGTGTCCCTCTTCTATCCCCCACGGTCTGCATTCCATTGATCTCTTTATGGCATGTATAAAGAATCTCTACTGAAAGTGCTTTTAGTCCAGGAATTGGGTCTGAGAAACAGGGGCCGGAACTAGTGCAATATGTGGAATAGCATCCGTAGTCACTGGTCAGACTGCTCACATCGAGCAGATGTGAAATGGCAGCCAATTCCCTctatatacagtgcactacttttggagcctttgcactatacagggaataggatgccattttggatACAGACATCTGTTTGTCACAATCAGACTGACCCCAAAATCCCCCTCCTGCCCCCCCATGGTCAGTtggccagtctctctctcgcgaTTGTGTCCAgataggaggggagggggggtgtatGGAACCCCCCCACTATCCTGAGTGTCTTTGGGTTGAGTCCTTTGGCCTTGGTTCCCTCCTTTAcactggatggagagagaggttctggcagagtgtgtgtgtgtgtgtgtgtgaccggaGACGTCAGGAAAGAGTTAGGTATGGAGTTGGTCCTAGCGTGGACGCGAACAGTTTGTAGAGGACTCAACACCCAGTCCTTTATCAAGTCACTTCCTGCTGCTGGGGTCATTTCCTGTTCCTTTCTGGGGGGccgtgagaggaggaggaggggttgatCATCCAGCTCCTCCCATGGCTGAACCCTCTCTCCCTCGAGGCGAGACAGGTTATCctttccctcctccttcctccctcccgtcCTTTTCTAGGGGTGTGGCAGGATCATGCGGTCCTCTATCAGTGTGTTGTCGGGGCCCAGCGACTCTACACACTGCTGGATGGTTGCTATAACACCAGACAGCCGTCTGTCCAGGGCAGCCAGGTGGGGCTCGGCCAGGACAGGGTTAATGGGGTCAAAGGTCAGGGCCTGTCTTAGGGCTGAACTCAGAGCCCCAGCTCTCAGCAGGTTCAACCTGTTCCACGTAGACACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2535706 lncRNA downstream 166903 25668905 ~ 25686040 (-) True G2216871
TU2535633 lncRNA downstream 259351 25592534 ~ 25593592 (-) True G2216807
TU2535654 lncRNA downstream 261749 25590737 ~ 25591194 (-) True G2216823
TU2535498 lncRNA downstream 470145 25361917 ~ 25382798 (-) False G2216696
TU2535868 lncRNA upstream 10830 25867875 ~ 25868185 (-) True G2217007
TU2535871 lncRNA upstream 13431 25870476 ~ 25870726 (-) True G2217010
TU2535872 lncRNA upstream 13766 25870811 ~ 25871046 (-) True G2217011
TU2535903 lncRNA upstream 51950 25908995 ~ 25909417 (-) True G2217035
TU2535905 lncRNA upstream 52716 25909761 ~ 25910074 (-) True G2217037
XM_021599292.2 mRNA downstream 47291 25779306 ~ 25805652 (-) True LOC110521612
XM_021599293.2 mRNA downstream 47861 25779306 ~ 25805082 (-) False LOC110521612
XM_021599284.2 mRNA downstream 169888 25656346 ~ 25683055 (-) False LOC110521609
XM_021599295.2 mRNA upstream 81726 25938771 ~ 25942246 (-) False LOC110521615
XM_036969397.1 mRNA upstream 81726 25938771 ~ 25942364 (-) True LOC110521615
XM_021599297.2 mRNA upstream 114723 25971768 ~ 25973905 (-) False LOC110521616
XM_021599298.2 mRNA upstream 114723 25971768 ~ 25973913 (-) True LOC110521616
NM_001165132.2 mRNA upstream 270491 26127536 ~ 26132937 (-) True LOC100305228
TU2532260 other downstream 2653537 23197647 ~ 23199406 (-) False G2213647
TU2532275 other downstream 2673332 23178506 ~ 23179611 (-) True G2213654
TU2532098 other downstream 2851695 22986359 ~ 23001248 (-) True LOC110521564
TU2531474 other downstream 3942207 21907963 ~ 21910736 (-) True G2212908
TU2531311 other downstream 4186328 21665964 ~ 21666615 (-) True G2212755
TU2536522 other upstream 60309 25917354 ~ 25920245 (-) False G2217605
TU2536525 other upstream 60309 25917354 ~ 25919877 (-) True G2217605
TU2536746 other upstream 379640 26236685 ~ 26237398 (-) True G2217805
TU2536765 other upstream 411301 26268346 ~ 26341495 (-) True G2217824
TU2537095 other upstream 1031844 26888889 ~ 26890611 (-) True G2218118

Expression Profile