RNA id: TCONS_00058619


Basic Information

Item Value
RNA id TCONS_00058619
length 942
RNA type mRNA
GC content 0.50
exon number 5
gene id XLOC_029925
representative True

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 13308139 ~ 13335624 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGCCTCAACCCAAAGTGAAGCTGGTGGTGACAGGAGATGATTTTGGGTACTGCGAGAGGAGAAATCAAGGGATTGTGGATTGCTTCAGAGCTGGTGGCATTTCCAATGTCTCTCTCCTGGTGAATGCAGTGTCAGCGAAACACGCGGCAGACCTGGCTAAAAGGTACCACATGCCCATTGGACTCCATGCGAATCTCTCCGAAGGTCTTCCAGTGTCTCAGGAACTGAAGGGTTCAACACTCCTCAACAAGGATGGTTTCTTTCATGGCAAGATGGGCTTCAGGGAAGTTTTGCACAGTGGTCAGCTCAAGATGTCAGAGGTGGAGGCGGAGCTTAGAGCCCAGGTGAATCGCTTCTTTGAACTGATTGGCCACATGCCTTACCATATGGATGGACACCAGCATGTGCACGTGTTGCCAGatgtgCGAGAGGTCTTTGCACAAGTTCTCTCTGATTTTGGGATCACCTACACCCGGGTCCCTATAGAGCCCGGTCTAAGGTTTTGCAACTTCCTCCCATCCCATCTGAGAGAATTCAACGCGCAGGTGGAAAAAGATGCCCTTGAATCTGTTGAGGTTTTTCATCGGAATGGAATCAGATGGCCTGACGTGTACCTGGGCCTGAGCACCATGGGTAAGAACATGTGTTTGTCCAACCTAAAACGTGCTTTGGAAGCTTCACTGGACGACGGTGTATCTTCTCCATTGATTCTGACACAGTCCAACAATGCAGCGAGCAACTGCTACCGACCGGTTACGGCAGAGCTCATGGTGCATCCAGGATATCCCAGTCAACCTCAGCAGGGTGGATGTGGAGAAGGACCGGACGACTTTTCACAGTCCACAGATCGACTACATGAGCTGAACACATTAAGAGACCCAATGGTGCTCAACTTTTACAGGCAACAAGGGATCCATCTGTGTGCTTTCAAAGACTTTTAA

Function

GO:

id name namespace
GO:0000287 magnesium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060526-182 Predicted to enable magnesium ion binding activity. Orthologous to human YDJC (YdjC chitooligosaccharide deacetylase homolog).

Ensembl:

ensembl_id ENSDART00000090851

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00061666 lncRNA upstream 34291 13291009 ~ 13292474 (+) True XLOC_029922
TCONS_00061409 lncRNA upstream 228309 13096467 ~ 13098456 (+) True XLOC_029918
TCONS_00061663 lncRNA upstream 327724 12992736 ~ 12999041 (+) False XLOC_029917
TCONS_00058627 lncRNA downstream 125488 13461112 ~ 13468268 (+) True XLOC_029929
TCONS_00061410 lncRNA downstream 267605 13603229 ~ 13603662 (+) False XLOC_029932
TCONS_00058632 lncRNA downstream 267912 13603536 ~ 13616296 (+) False XLOC_029932
TCONS_00061411 lncRNA downstream 273772 13609396 ~ 13610301 (+) True XLOC_029932
TCONS_00061667 lncRNA downstream 330194 13665818 ~ 13671755 (+) False XLOC_029934
TCONS_00058613 mRNA upstream 76899 13245589 ~ 13249866 (+) True XLOC_029919
TCONS_00058612 mRNA upstream 77503 13243446 ~ 13249262 (+) False XLOC_029919
TCONS_00058610 mRNA upstream 346779 12908781 ~ 12979986 (+) True XLOC_029915
TCONS_00058608 mRNA upstream 420223 12888260 ~ 12906542 (+) False XLOC_029914
TCONS_00058620 mRNA downstream 18242 13353866 ~ 13392579 (+) False XLOC_029926
TCONS_00058621 mRNA downstream 23522 13359146 ~ 13392962 (+) False XLOC_029926
TCONS_00058622 mRNA downstream 37969 13373593 ~ 13376424 (+) True XLOC_029927
TCONS_00058623 mRNA downstream 50213 13385837 ~ 13392383 (+) True XLOC_029926
TCONS_00058624 mRNA downstream 58919 13394543 ~ 13427349 (+) False XLOC_029928
TCONS_00058617 other upstream 27351 13299331 ~ 13299414 (+) True XLOC_029924
TCONS_00058616 other upstream 30343 13296307 ~ 13296422 (+) True XLOC_029923
TCONS_00058615 other upstream 37332 13289353 ~ 13289433 (+) True XLOC_029921
TCONS_00058614 other upstream 37859 13288828 ~ 13288906 (+) True XLOC_029920
TCONS_00058611 other upstream 399211 12927438 ~ 12927554 (+) True XLOC_029916
TCONS_00058637 other downstream 1306528 14642152 ~ 14642269 (+) True XLOC_029938
TCONS_00058647 other downstream 2407513 15743137 ~ 15743253 (+) True XLOC_029945
TCONS_00058656 other downstream 3693674 17029298 ~ 17029414 (+) True XLOC_029952
TCONS_00058672 other downstream 5797812 19133436 ~ 19134910 (+) False XLOC_029967
TCONS_00058694 other downstream 6742070 20077694 ~ 20077810 (+) True XLOC_029982

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000071_04452788_04455610.mRNA True 702 mRNA 0.47 3 CI01000071 4452697 ~ 4455642 (-)