Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00058623 |
| length | 420 |
| RNA type | mRNA |
| GC content | 0.49 |
| exon number | 4 |
| gene id | XLOC_029926 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007116.7 |
| NCBI id | CM002889.2 |
| chromosome length | 72500376 |
| location | 13353866 ~ 13392962 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0043547 | positive regulation of GTPase activity | biological_process |
| GO:0007186 | G protein-coupled receptor signaling pathway | biological_process |
| GO:0002548 | monocyte chemotaxis | biological_process |
| GO:0006935 | chemotaxis | biological_process |
| GO:0006954 | inflammatory response | biological_process |
| GO:0006955 | immune response | biological_process |
| GO:0071346 | cellular response to interferon-gamma | biological_process |
| GO:0071347 | cellular response to interleukin-1 | biological_process |
| GO:0071356 | cellular response to tumor necrosis factor | biological_process |
| GO:0048247 | lymphocyte chemotaxis | biological_process |
| GO:0070098 | chemokine-mediated signaling pathway | biological_process |
| GO:0070374 | positive regulation of ERK1 and ERK2 cascade | biological_process |
| GO:0009953 | dorsal/ventral pattern formation | biological_process |
| GO:0030593 | neutrophil chemotaxis | biological_process |
| GO:0005576 | extracellular region | cellular_component |
| GO:0005615 | extracellular space | cellular_component |
| GO:0005125 | cytokine activity | molecular_function |
| GO:0048020 | CCR chemokine receptor binding | molecular_function |
| GO:0008009 | chemokine activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-060526-181 | Predicted to enable CCR chemokine receptor binding activity and chemokine activity. Acts upstream of or within dorsal/ventral pattern formation. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Orthologous to human CCL19 (C-C motif chemokine ligand 19). |
| ensembl_id | ENSDART00000191190 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00061666 | lncRNA | upstream | 93363 | 13291009 ~ 13292474 (+) | True | XLOC_029922 |
| TCONS_00061409 | lncRNA | upstream | 287381 | 13096467 ~ 13098456 (+) | True | XLOC_029918 |
| TCONS_00061663 | lncRNA | upstream | 386796 | 12992736 ~ 12999041 (+) | False | XLOC_029917 |
| TCONS_00058627 | lncRNA | downstream | 68729 | 13461112 ~ 13468268 (+) | True | XLOC_029929 |
| TCONS_00061410 | lncRNA | downstream | 210846 | 13603229 ~ 13603662 (+) | False | XLOC_029932 |
| TCONS_00058632 | lncRNA | downstream | 211153 | 13603536 ~ 13616296 (+) | False | XLOC_029932 |
| TCONS_00061411 | lncRNA | downstream | 217013 | 13609396 ~ 13610301 (+) | True | XLOC_029932 |
| TCONS_00061667 | lncRNA | downstream | 273435 | 13665818 ~ 13671755 (+) | False | XLOC_029934 |
| TCONS_00058622 | mRNA | upstream | 9413 | 13373593 ~ 13376424 (+) | True | XLOC_029927 |
| TCONS_00058618 | mRNA | upstream | 50213 | 13308139 ~ 13335624 (+) | False | XLOC_029925 |
| TCONS_00058619 | mRNA | upstream | 50213 | 13326765 ~ 13335624 (+) | True | XLOC_029925 |
| TCONS_00058613 | mRNA | upstream | 135971 | 13245589 ~ 13249866 (+) | True | XLOC_029919 |
| TCONS_00058612 | mRNA | upstream | 136575 | 13243446 ~ 13249262 (+) | False | XLOC_029919 |
| TCONS_00058624 | mRNA | downstream | 2160 | 13394543 ~ 13427349 (+) | False | XLOC_029928 |
| TCONS_00058625 | mRNA | downstream | 2269 | 13394652 ~ 13426883 (+) | True | XLOC_029928 |
| TCONS_00058626 | mRNA | downstream | 35443 | 13427826 ~ 13469307 (+) | False | XLOC_029929 |
| TCONS_00058628 | mRNA | downstream | 79851 | 13472234 ~ 13540731 (+) | False | XLOC_029930 |
| TCONS_00058629 | mRNA | downstream | 79862 | 13472245 ~ 13504156 (+) | False | XLOC_029930 |
| TCONS_00058617 | other | upstream | 86423 | 13299331 ~ 13299414 (+) | True | XLOC_029924 |
| TCONS_00058616 | other | upstream | 89415 | 13296307 ~ 13296422 (+) | True | XLOC_029923 |
| TCONS_00058615 | other | upstream | 96404 | 13289353 ~ 13289433 (+) | True | XLOC_029921 |
| TCONS_00058614 | other | upstream | 96931 | 13288828 ~ 13288906 (+) | True | XLOC_029920 |
| TCONS_00058611 | other | upstream | 458283 | 12927438 ~ 12927554 (+) | True | XLOC_029916 |
| TCONS_00058637 | other | downstream | 1249769 | 14642152 ~ 14642269 (+) | True | XLOC_029938 |
| TCONS_00058647 | other | downstream | 2350754 | 15743137 ~ 15743253 (+) | True | XLOC_029945 |
| TCONS_00058656 | other | downstream | 3636915 | 17029298 ~ 17029414 (+) | True | XLOC_029952 |
| TCONS_00058672 | other | downstream | 5741053 | 19133436 ~ 19134910 (+) | False | XLOC_029967 |
| TCONS_00058694 | other | downstream | 6685311 | 20077694 ~ 20077810 (+) | True | XLOC_029982 |
