RNA id: TCONS_00005778


Basic Information

Item Value
RNA id TCONS_00005778
length 242
lncRNA type antisense_over
GC content 0.41
exon number 1
gene id XLOC_002970
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 38663993 ~ 38664234 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGCgttttaaaaaggtaaataatgAAACAGGCCTGCAGCCAAACTACTGCATGTGCCGTCGCCTATTGTGACCAAGTTCAGATATTAATATAGCTCTTATTCAGCTCAAAACTCACCAGATGTCTGCACAGTTGCGAACGTGTACTGTAAAGTGCACGAGATGTCATTTTCGCGATGAAATACTGTACTCAATAAAGCGCAGTTCCCAAATTTCACCTTCAAATATCCGAAGTAAACGCTT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005474 lncRNA downstream 137283 38511908 ~ 38526710 (-) True XLOC_002969
TCONS_00006121 lncRNA downstream 148462 38511908 ~ 38515531 (-) False XLOC_002969
TCONS_00006120 lncRNA downstream 232898 38412930 ~ 38431095 (-) False XLOC_002967
TCONS_00006119 lncRNA downstream 233335 38412930 ~ 38430658 (-) False XLOC_002967
TCONS_00006118 lncRNA downstream 347832 38313623 ~ 38316161 (-) True XLOC_002965
TCONS_00006122 lncRNA upstream 423091 39087325 ~ 39090088 (-) True XLOC_002973
TCONS_00005520 lncRNA upstream 1825403 40489637 ~ 40490637 (-) True XLOC_003004
TCONS_00005521 lncRNA upstream 1833925 40498159 ~ 40499209 (-) True XLOC_003005
TCONS_00005779 lncRNA upstream 1956747 40620981 ~ 40621955 (-) True XLOC_003023
TCONS_00006123 lncRNA upstream 2186903 40851137 ~ 40857097 (-) True XLOC_003028
TCONS_00005470 mRNA downstream 165921 38430359 ~ 38498072 (-) False XLOC_002967
TCONS_00005473 mRNA downstream 195146 38448274 ~ 38468847 (-) True XLOC_002967
TCONS_00005469 mRNA downstream 207611 38430359 ~ 38456382 (-) False XLOC_002967
TCONS_00005471 mRNA downstream 220681 38433091 ~ 38443312 (-) False XLOC_002967
TCONS_00005466 mRNA downstream 347859 38256556 ~ 38316134 (-) False XLOC_002965
TCONS_00005475 mRNA upstream 305195 38969429 ~ 39011514 (-) True XLOC_002971
TCONS_00005476 mRNA upstream 364097 39028331 ~ 39055620 (-) False XLOC_002972
TCONS_00005477 mRNA upstream 364097 39028331 ~ 39091894 (-) False XLOC_002972
TCONS_00005478 mRNA upstream 366541 39030775 ~ 39052264 (-) True XLOC_002972
TCONS_00005479 mRNA upstream 461403 39125637 ~ 39130935 (-) False XLOC_002974
TCONS_00005472 other downstream 229494 38434383 ~ 38434499 (-) True XLOC_002968
TCONS_00005468 other downstream 287740 38376134 ~ 38376253 (-) True XLOC_002966
TCONS_00005467 other downstream 347923 38290887 ~ 38316070 (-) False XLOC_002965
TCONS_00005463 other downstream 589602 38074312 ~ 38074391 (-) True XLOC_002962
TCONS_00005461 other downstream 591825 38072077 ~ 38072168 (-) True XLOC_002963
TCONS_00005497 other upstream 1710776 40375010 ~ 40375996 (-) True XLOC_002983
TCONS_00005499 other upstream 1719548 40383782 ~ 40384432 (-) True XLOC_002985
TCONS_00005503 other upstream 1739760 40403994 ~ 40404331 (-) True XLOC_002989
TCONS_00005507 other upstream 1754573 40418807 ~ 40419059 (-) True XLOC_002993
TCONS_00005514 other upstream 1804138 40468372 ~ 40469394 (-) True XLOC_003000