RNA id: TCONS_00006122


Basic Information

Item Value
RNA id TCONS_00006122
length 314
lncRNA type intronic
GC content 0.34
exon number 2
gene id XLOC_002973
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 39087325 ~ 39090088 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACaaattaagAGTATGCAGAAATTCATCCCACGTCTGTTATCGGTACCATAACACAAACTGGACTCAAAGCCCACAAAACCgtcttttattagattttttttttcacagcagttTTACAAATTTATTGCGGTACTATCACAGAAGAGACAAAATCAATACACACGAAGCACAGGCCTGACATGAACTCCAGAACTAGAGAATATGTTTATTTAGCAGAAATGATTATGGAGAACTGCAGTTAACATATGAAACACAGCTTACAAACGTTCTACAAGTAATCTTTCGCcttataaacaataaacaaagagTTATT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005778 lncRNA downstream 423091 38663993 ~ 38664234 (-) True XLOC_002970
TCONS_00005474 lncRNA downstream 560615 38511908 ~ 38526710 (-) True XLOC_002969
TCONS_00006121 lncRNA downstream 571794 38511908 ~ 38515531 (-) False XLOC_002969
TCONS_00006120 lncRNA downstream 656230 38412930 ~ 38431095 (-) False XLOC_002967
TCONS_00006119 lncRNA downstream 656667 38412930 ~ 38430658 (-) False XLOC_002967
TCONS_00005520 lncRNA upstream 1399549 40489637 ~ 40490637 (-) True XLOC_003004
TCONS_00005521 lncRNA upstream 1408071 40498159 ~ 40499209 (-) True XLOC_003005
TCONS_00005779 lncRNA upstream 1530893 40620981 ~ 40621955 (-) True XLOC_003023
TCONS_00006123 lncRNA upstream 1761049 40851137 ~ 40857097 (-) True XLOC_003028
TCONS_00005562 lncRNA upstream 2278020 41368108 ~ 41368637 (-) True XLOC_003034
TCONS_00005476 mRNA downstream 31705 39028331 ~ 39055620 (-) False XLOC_002972
TCONS_00005478 mRNA downstream 35061 39030775 ~ 39052264 (-) True XLOC_002972
TCONS_00005475 mRNA downstream 75811 38969429 ~ 39011514 (-) True XLOC_002971
TCONS_00005470 mRNA downstream 589253 38430359 ~ 38498072 (-) False XLOC_002967
TCONS_00005473 mRNA downstream 618478 38448274 ~ 38468847 (-) True XLOC_002967
TCONS_00005479 mRNA upstream 35549 39125637 ~ 39130935 (-) False XLOC_002974
TCONS_00005480 mRNA upstream 35551 39125639 ~ 39130839 (-) True XLOC_002974
TCONS_00005481 mRNA upstream 43322 39133410 ~ 39154778 (-) False XLOC_002975
TCONS_00005482 mRNA upstream 46018 39136106 ~ 39153997 (-) False XLOC_002975
TCONS_00005483 mRNA upstream 53824 39143912 ~ 39153959 (-) False XLOC_002975
TCONS_00005472 other downstream 652826 38434383 ~ 38434499 (-) True XLOC_002968
TCONS_00005468 other downstream 711072 38376134 ~ 38376253 (-) True XLOC_002966
TCONS_00005467 other downstream 771255 38290887 ~ 38316070 (-) False XLOC_002965
TCONS_00005463 other downstream 1012934 38074312 ~ 38074391 (-) True XLOC_002962
TCONS_00005461 other downstream 1015157 38072077 ~ 38072168 (-) True XLOC_002963
TCONS_00005497 other upstream 1284922 40375010 ~ 40375996 (-) True XLOC_002983
TCONS_00005499 other upstream 1293694 40383782 ~ 40384432 (-) True XLOC_002985
TCONS_00005503 other upstream 1313906 40403994 ~ 40404331 (-) True XLOC_002989
TCONS_00005507 other upstream 1328719 40418807 ~ 40419059 (-) True XLOC_002993
TCONS_00005514 other upstream 1378284 40468372 ~ 40469394 (-) True XLOC_003000

Expression Profile

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