RNA id: TCONS_00061811


Basic Information

Item Value
RNA id TCONS_00061811
length 2238
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id XLOC_030533
representative False

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 59605706 ~ 60222140 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATCTTTACCGCTTCCCGCTGTTATCAGATAAAAGTGATGAGCTTGATGAACGTAAACAACACACTTCAGATAGCGGACCCATGACTCGTATCAACATCAGCCAGATGGCAGGCTGAAATGTGACACAGCTGCTGTCAGTTTTAATGAGATGCAGCCGAACGCGACGGACGCTTGAAAACGTCAGAGCGGGTCTGATTGTGAAGGCTCGCGTCACGTGACCGCCGTGAACCGGAGATTTGAGCGTCCAGGGCTTCTCCCGCTACTTCAAGTGCAAGTCCAGCGGAACGCGACGCGCACTTCACGCCATTCACAGCCCGACTGTTGAAACGCAAAGTTCGCTTGTGTGACCTAAGGAGAGGGGGTGGTCTTGAATTAATCTCTCTACTTTGACGGAGCTCAACAGTGACGCCGAGTCTGCTGTCTCTTGTTTTACAGACCGGAGCGCTGCATTGATAACGAGAATAGACTACAGCATTTATAAGTAATCGGAGTTTTAATAAAATGGACACGGTATGCTTCATACAGTGATGTCAACGGTTAAGGTGGCTTACCATCTGTACTAGTTAACCAGGAAAGATAGCCTACCCATCAGTTTCTCCTCAGTCCTCAGAGAAGAATTTCAAGTCATCTCTTGGACTTCGTTCAAGAAGAAAACACTTTTTGTAATCGACGAGGACAACTAAACGCTTATTTCCCTGCATACGACCGTTTAACTTCAGGTTGAATATACATCCGGACCTCCTCATATATGTCAAGGAAATACTAACACTAATTAATCAAGAGCGCTGTGGATCAGCTGTTTGTTTCTGATACCTCAAATCTGAGATGCTGTTAAACTAACAGGCTCATGGACGACACCGTTATTGTGCCGTTGCCATACTATTCCTGGCGTTTCGTGCATTCACTGGATTACAGTCTGAATTAAAAGCTGTGGATGGACGAAAGAGGCTATTTTTCCCTGTCTTGTGGATTACTGAGAGCGAGAGATACGCGTGGGAATCGAGACACCTGAGTCGGATACCTGTAACTTTTCTCTCTCGAAAGCTCTTCGGTCGCTGCTAGActgtcttttttttaattcaacctCAACCTGATTTGATATAATGGACGTGGTATCTGTAGATAAAGTTCCCCAGCATCACAACCCTTGCTGGGAATTCGTCTCTGGACTGTAGTCGGTCGGTCGGGAGTGATATTTCGGAGGAGCGCTGTTGTTTATCATCACAAACGGGATTTAGCCTATTCTGGAACTATGATGTCTGTTATACGCTCTTGGATGGAAACTCTGTTGCTGTATATGTTCATTTCGTGTGCCATAAGAACAAAGGCAACATCATTTGGGAGTCATCAAAGTCCTGAGGGTTTGTAATGTGACTTGACTATAATCTATCATGGTATTTGACAGACGCTTGGATGTGAGGGAAAACCAGAAAAGGAATTTCTTTTAGAgaaatgttttgatttttaaGTTATGAATTGTGCTTTGGGAATTCTTTCATTTTGATTCGATCAGCTCGCTTGGATTCCTTTCTTCCATGATTCATGCGATGAACCTATAGAAGGCAGACGCATCGAGAGGTCAGATGAGCTCATGATGTCATGTGTCGGGCTCTGTCCAATACAGATGCGCATATTTGCTAACAATGCCACTCAGTCATGCAATCCAGACAGACTTCATCTGCGGTTGATGCTGATGCAGTTGGGCAATAAATTGGGCCAACACAAGTGCGTCTGCTCCGCTTCCAGTTACAGAAGTGACAGACAGGAACCAGGCATAAAGATCAAGGCTTAGGAAAACATCAACAAACCTGAGACGTGCCGCGAGCTCTCCAGGAATGTCTTGTTTGCTAATCCACAGCATTGCACCTGTACGGTCTCAGATGCCCTGGTACGGTTTCAGAGTTGCTTCCTCGTGAAACCAAATCATCTGGAAAGAAATCACTTTGTTTTGTactcttgttttatttattaggcCTGGGAAGTGGCATCGGTGGAGCTTCGGCGCCGGTGATTGTTAGATCCCTGTGCTTCTCCATGTTTTTTATGACAAACTAACCTGAAATTATTCCCGACTACACTTCTAATTGTATTCTGATTAATATGTGACTTACTTTTGGTATAAAGTTTTAGAATTATTGTACATTGAAAACAAGTTTTCAAGCAAATGGTCATTTCTGTAATAATTAGTTCACcctaaactgaaaattctgtcatcgctTACTCAGCCTCTACTTATTC

Function

GO:

id name namespace
GO:0006898 receptor-mediated endocytosis biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00059619 lncRNA upstream 253840 59605706 ~ 59788523 (+) False XLOC_030533
TCONS_00061476 lncRNA upstream 255531 59775473 ~ 59786832 (+) False XLOC_030533
TCONS_00059618 lncRNA upstream 265990 59605750 ~ 59776373 (+) False XLOC_030533
TCONS_00061809 lncRNA upstream 356111 59606130 ~ 59686252 (+) False XLOC_030533
TCONS_00061808 lncRNA upstream 390654 59605988 ~ 59651709 (+) False XLOC_030533
TCONS_00061817 lncRNA downstream 147061 60225573 ~ 60226473 (+) True XLOC_030536
TCONS_00061818 lncRNA downstream 623913 60702425 ~ 60713740 (+) True XLOC_030538
TCONS_00061819 lncRNA downstream 685425 60763937 ~ 60777523 (+) False XLOC_030539
TCONS_00061820 lncRNA downstream 685666 60764178 ~ 60777523 (+) True XLOC_030539
TCONS_00059634 lncRNA downstream 1271221 61349733 ~ 61354529 (+) False XLOC_030545
TCONS_00059617 mRNA upstream 446766 59553732 ~ 59595597 (+) True XLOC_030532
TCONS_00059615 mRNA upstream 446773 59553636 ~ 59595590 (+) False XLOC_030532
TCONS_00059616 mRNA upstream 446773 59553679 ~ 59595590 (+) False XLOC_030532
TCONS_00059614 mRNA upstream 448826 59553636 ~ 59593537 (+) False XLOC_030532
TCONS_00059613 mRNA upstream 505102 59534286 ~ 59537261 (+) True XLOC_030531
TCONS_00059622 mRNA downstream 440099 60518611 ~ 60684971 (+) False XLOC_030537
TCONS_00059621 mRNA downstream 440099 60518611 ~ 60684971 (+) False XLOC_030537
TCONS_00059623 mRNA downstream 512284 60590796 ~ 60687619 (+) True XLOC_030537
TCONS_00059625 mRNA downstream 769311 60847823 ~ 60873092 (+) True XLOC_030541
TCONS_00059626 mRNA downstream 807591 60886103 ~ 60906496 (+) True XLOC_030542
TCONS_00059620 other upstream 287102 59755144 ~ 59755261 (+) True XLOC_030535
TCONS_00059609 other upstream 562534 59436500 ~ 59479829 (+) False XLOC_030529
TCONS_00059581 other upstream 1659717 58372223 ~ 58382646 (+) True XLOC_030512
TCONS_00059579 other upstream 1830079 58212161 ~ 58212284 (+) True XLOC_030511
TCONS_00059578 other upstream 2004477 58037772 ~ 58037886 (+) True XLOC_030510
TCONS_00059624 other downstream 697369 60775881 ~ 60775998 (+) True XLOC_030540
TCONS_00059631 other downstream 1181440 61259952 ~ 61260067 (+) True XLOC_030544
TCONS_00059636 other downstream 1272856 61351368 ~ 61351501 (+) False XLOC_030545
TCONS_00059637 other downstream 1273408 61351920 ~ 61351995 (+) False XLOC_030545
TCONS_00059638 other downstream 1273819 61352331 ~ 61352465 (+) False XLOC_030545

Expression Profile

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